Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0020
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 246 8e-66
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 246 8e-66
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 241 3e-64
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 49 3e-06
At3g50610.1 68416.m05534 hypothetical protein 29 2.2
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.2
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 2.9
At5g13260.1 68418.m01523 expressed protein 28 5.1
At1g33410.1 68414.m04136 expressed protein 28 5.1
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 28 6.8
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 6.8
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 6.8
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 246 bits (603), Expect = 8e-66
Identities = 118/213 (55%), Positives = 158/213 (74%), Gaps = 2/213 (0%)
Frame = +3
Query: 63 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 242
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 243 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 416
M+++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 417 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 596
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 597 NISPFSYGLVVKQVYDSGTIFAPEILDIKPEDL 695
I PFSYGLVV+ VYD+G++F+PE+LD+ + L
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQL 213
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 246 bits (603), Expect = 8e-66
Identities = 118/213 (55%), Positives = 158/213 (74%), Gaps = 2/213 (0%)
Frame = +3
Query: 63 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 242
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 243 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 416
M+++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 417 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 596
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 597 NISPFSYGLVVKQVYDSGTIFAPEILDIKPEDL 695
I PFSYGLVV+ VYD+G++F+PE+LD+ + L
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQL 213
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 241 bits (590), Expect = 3e-64
Identities = 117/208 (56%), Positives = 154/208 (74%), Gaps = 2/208 (0%)
Frame = +3
Query: 78 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 257
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 258 KDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVI 431
+ H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 67 RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126
Query: 432 PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPF 611
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PF
Sbjct: 127 QPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPF 186
Query: 612 SYGLVVKQVYDSGTIFAPEILDIKPEDL 695
SYGLVV+ VYD+G++F PE+L++ +DL
Sbjct: 187 SYGLVVESVYDNGSVFNPEVLNLTEDDL 214
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 48.8 bits (111), Expect = 3e-06
Identities = 37/200 (18%), Positives = 91/200 (45%), Gaps = 5/200 (2%)
Frame = +3
Query: 111 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PA 284
I + +++Y ++ +N+ + + ++ R R + +G N +M+ A+ ++
Sbjct: 30 IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSG 89
Query: 285 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPE 461
+ K+ ++G+ G + T EV + +R G+IA +V + E
Sbjct: 90 IYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHE 149
Query: 462 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVKQ 635
+ L +P +++KGT+E++ D + + G ++ A +L +L ++ F L+ +
Sbjct: 150 MEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRW 209
Query: 636 VYDSGTIFAPEILDIKPEDL 695
++ ++ ++ EDL
Sbjct: 210 SPSDFELYREDLSELYREDL 229
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 261 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 437
D + +P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 438 HNTGLGPEK 464
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 273 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 371
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.1 bits (62), Expect = 2.9
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = -3
Query: 586 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAM 407
RR + + G + + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 406 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 272
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 222 ARYWSHVARYGSAASVASPRYRH 154
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 172 RNRCSRSVSRYVAPVSCSW--EKTQ*CAKPSKTTWTTIQPSRNCC 300
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 667 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEILVGI 488
+G+ PE+Y+ + PYE E + R +++ P +P + L+ + EI G
Sbjct: 371 NGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGD 427
Query: 487 E 485
E
Sbjct: 428 E 428
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 424 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 311
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 283 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 387
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -2
Query: 440 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 294
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,001,432
Number of Sequences: 28952
Number of extensions: 377190
Number of successful extensions: 1115
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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