SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B06
         (1001 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22060.1 68414.m02759 expressed protein                             33   0.30 
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    30   2.1  
At1g61080.1 68414.m06877 proline-rich family protein                   30   2.1  
At1g53800.1 68414.m06123 expressed protein                             30   2.1  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    30   2.8  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    30   2.8  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    29   3.7  
At4g06526.1 68417.m00938 hypothetical protein                          29   4.9  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    29   6.4  
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    29   6.4  
At5g55540.1 68418.m06919 expressed protein                             28   8.5  
At4g34920.1 68417.m04951 1-phosphatidylinositol phosphodiesteras...    28   8.5  
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro...    28   8.5  

>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 207  ESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINE 317
            E MLDT   +S++  E++ + D   +LSLKF  +  E
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGE 1968


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
           P  +PP P  PP   P   PP       PP  P
Sbjct: 493 PVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPP 525



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPP 929
           P  +PP P  PP   P   PP       PP
Sbjct: 447 PVYSPPPPPPPPPPPPVYSPPPPPPPPPPP 476



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPP 929
           P  +PP P  PP   P   PP       PP
Sbjct: 478 PVYSPPPPSPPPPPPPVYSPPPPPPPPPPP 507


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +3

Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXPLSSXGXXGXP 968
           P   PP P       P   PP       PP  P+ + G  G P
Sbjct: 549 PPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGPP 591


>At1g53800.1 68414.m06123 expressed protein
          Length = 568

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 525 PLKXKQPEDSKRPVAEPTETTPTNVSREEMEFXTESNVRDVDVR 656
           P+  ++     R  AEP + TPT  S  + EF  +S V+ V VR
Sbjct: 284 PVGVERRRRRPRSDAEPRKKTPTKKSTRDSEFERQSQVQVVKVR 327


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXPLS 944
           P   PP P  PP   P   PP       PP  P S
Sbjct: 385 PPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPS 419



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 849 APPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
           +PP P  PP   P   PP       PP  P
Sbjct: 375 SPPSPPPPPPPPPPPPPPPPPPPPPPPPPP 404



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 849 APPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
           +PP P  PP   P   PP       PP  P
Sbjct: 378 SPPPPPPPPPPPPPPPPPPPPPPPPPPPPP 407


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
           P   PP P  PP   P   PP       PP  P
Sbjct: 58  PADCPPPPPPPPCPPPPSPPPCPPPPSPPPSPP 90



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXPL 941
           P   PP P  PP   P   PP       PP   L
Sbjct: 67  PPPCPPPPSPPPCPPPPSPPPSPPPPQLPPPPQL 100


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +3

Query: 852 PPXPXXPPXXXPXXXPPXXXXXXXPPXXPLSSXGXXGXP 968
           PP P   P   P   PP       PP  P+S  G    P
Sbjct: 398 PPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKKGPPKPP 436


>At4g06526.1 68417.m00938 hypothetical protein
          Length = 506

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 729 WTAXGGRGSXLQLSRSHWXSGLSPSGRQRPARCSRWXTPSLH 604
           W     RG+ L+L+RS W  G++P    R A  S W     H
Sbjct: 429 WVGHLTRGA-LRLNRSLWGGGVTPVATCRQALLSGWLYEKFH 469


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXPLSS 947
           P  +PP P   P   P   PP       PP  P+ S
Sbjct: 723 PVHSPPPPVQSPPPPPVFSPPPPAPIYSPPPPPVHS 758


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/79 (15%), Positives = 40/79 (50%)
 Frame = +3

Query: 189 FSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGY 368
           F+P + E    T  + + L    ++++ +    ++    ++ + + + D Y++   +PG 
Sbjct: 88  FTPTLNEFFPPT--IGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGL 145

Query: 369 EQKDINVKAKNGVLMVQAN 425
            ++D+ +   +G+L ++ +
Sbjct: 146 TKEDVKITVNDGILTIKGD 164


>At5g55540.1 68418.m06919 expressed protein
          Length = 1380

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 267 DDMMKELSLKFPSIINEGRVEGDKYQISIH 356
           D    + SL  PSI+ EGR +  K+QI+ H
Sbjct: 866 DPSSPDSSLLVPSILEEGRGKTQKWQINTH 895


>At4g34920.1 68417.m04951 1-phosphatidylinositol
           phosphodiesterase-related contains weak similarity to
           1-phosphatidylinositol phosphodiesterase precursor (EC
           3.1.4.10) (Phosphatidylinositol-specific phospholipase
           C) (PI-PLC). (Swiss-Prot:P34024) [Listeria
           monocytogenes]
          Length = 318

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 192 SPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKF 299
           S Y++++ +DT   W+   + ++HL +     S KF
Sbjct: 209 SDYLKDNWIDTDLPWTKFQSNLKHLSEQQPTSSRKF 244


>At4g15200.1 68417.m02329 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 600

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 840 PXXAPPXPXXPPXXXPXXXPPXXXXXXXPPXXP 938
           P  A P P  PP   P   PP       PP  P
Sbjct: 268 PPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAP 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,353
Number of Sequences: 28952
Number of extensions: 354187
Number of successful extensions: 1862
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2450812896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -