Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A23
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01650.1 68418.m00081 macrophage migration inhibitory factor ...    55   2e-08
At5g57170.1 68418.m07141 macrophage migration inhibitory factor ...    43   1e-04
At4g31100.1 68417.m04414 wall-associated kinase, putative              28   3.1  
At5g56620.1 68418.m07069 no apical meristem (NAM) family protein...    27   4.1  
At4g25770.1 68417.m03709 expressed protein                             27   5.4  
At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related...    27   5.4  
At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related...    27   7.1  
At1g74120.1 68414.m08584 mitochondrial transcription termination...    27   7.1  
At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1) ne...    26   9.4  
At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing ...    26   9.4  

>At5g01650.1 68418.m00081 macrophage migration inhibitory factor
           family protein / MIF family protein contains pfam
           profile: PF001187 Macrophage migration inhibitory factor
          Length = 115

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 29/69 (42%), Positives = 38/69 (55%)
 Frame = +1

Query: 139 PISFGGESTSPGAVATLESIGNLGVKENKEIANEVSAFVEKELGIKKDRFFLTFYDVLNY 318
           P+SFGG +  P A   L SIG L    NK+++  VSA +E +L + K RFFL FYD    
Sbjct: 48  PMSFGG-TEDPAAYGELVSIGGLNADVNKKLSAAVSAILETKLSVPKSRFFLKFYDTKGS 106

Query: 319 NVAKGGITI 345
                G T+
Sbjct: 107 FFGWNGATL 115


>At5g57170.1 68418.m07141 macrophage migration inhibitory factor
           family protein / MIF family protein contains Pfam
           profile: PF01187 Macrophage migration inhibitory
           factor(MIF)
          Length = 115

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/56 (37%), Positives = 32/56 (57%)
 Frame = +1

Query: 139 PISFGGESTSPGAVATLESIGNLGVKENKEIANEVSAFVEKELGIKKDRFFLTFYD 306
           PI+F G +  P A   L SIG LG   N +++  +S  ++ +L I   RF++ FYD
Sbjct: 48  PIAFAG-TEEPAAYGELISIGGLGPGVNGKLSETISEILQIKLSIDSSRFYIKFYD 102


>At4g31100.1 68417.m04414 wall-associated kinase, putative
          Length = 786

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 136 CQGVTTQINFSGTFLTVFDKTGIILLTKSTGIFV 35
           C+   T +NF G +  V DKT  I++   TG  V
Sbjct: 347 CKETDTCVNFEGGYRCVGDKTKAIMIGAGTGFGV 380


>At5g56620.1 68418.m07069 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 386

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = +1

Query: 76  FYRRQSRRCLKNLFVS*HPDSP--ISFGGESTSPGAVATLESIGNLGVKENKEIANEVSA 249
           FY+ Q R+C+ N   S H  S   I  G         ATL+S+G+  V     +     +
Sbjct: 211 FYQTQPRQCVSNTNWSDHHGSKDVIGIGVGDEISSVAATLQSLGSGDVVSRVNMHPHTRS 270

Query: 250 FVEKELGIKKDR 285
           F E      K R
Sbjct: 271 FDEGTAEASKGR 282


>At4g25770.1 68417.m03709 expressed protein
          Length = 418

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 115 FVS*HPDSPISFGGESTSPGAVATLESIGNLGVKENKEIANEVSAFVEKELGIKKDRF 288
           FV   PD  +    ES S  A  T + +  +G    + +ANEV   V+   G+KK  F
Sbjct: 115 FVKKFPDKVLVHRSESNS--ATLTFDGVDKMG----ERLANEVLGVVKHRSGLKKISF 166


>At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related
           contains similarity to storekeeper protein [Solanum
           tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
           Protein of unknown function, DUF573
          Length = 414

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 187 LESIGNLGVKENKEIANEVSA-FV-EKELGIKKDRF 288
           L+++ N+GV+  KE+ NE  A FV E+ L +KK  F
Sbjct: 368 LQNLENVGVERRKELINEWKALFVDEQRLCVKKLTF 403


>At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related
           contains similarity to storekeeper protein [Solanum
           tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
           Protein of unknown function, DUF573
          Length = 572

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 187 LESIGNLGVKENKEIANEVSAFV--EKELGIKKDRFFLTFYDVLN 315
           LE + NLG  + +E++NE  A    E +L I K RF     +  N
Sbjct: 254 LEKLMNLGTGKRRELSNEWKALCVEELKLNINKLRFSAKLAEAAN 298


>At1g74120.1 68414.m08584 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 445

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 247 AFVEKELGIKKDRFFLTFYDVLNYNVAKGGITIDLIEP*LFKTSSKD*KNT*ISP 411
           A V + LG+   +  +  Y+V++Y   KGG+  D+    L K S K   N  + P
Sbjct: 339 ADVPEYLGVNLQKQIVPRYNVIDYLKLKGGLGCDIGLKGLIKPSMKRFYNLYVMP 393


>At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1)
           nearly identical to SP|P35510
          Length = 725

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +1

Query: 142 ISFGGESTSPGAVATLESIGNLGVKENKEIA----NEVSAFVEKELGIKKDRFFLTF-YD 306
           ++ GGE+ + G VA + +IGN    E  E A    N  S +V + +    D + +T  + 
Sbjct: 65  VNLGGETLTIGQVAAISTIGNSVKVELSETARAGVNASSDWVMESMNKGTDSYGVTTGFG 124

Query: 307 VLNYNVAKGGITI 345
             ++   K G+ +
Sbjct: 125 ATSHRRTKNGVAL 137


>At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing
           protein
          Length = 311

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 127 HPDSPISFGGESTSPGAVATLESIGNLGVKENKE 228
           HP  P++ GG+      + TL S+ +L V  N E
Sbjct: 217 HPHKPMNNGGDMLGQSHLQTLASLQDLHVGGNNE 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,180,605
Number of Sequences: 28952
Number of extensions: 149332
Number of successful extensions: 373
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)