Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A12
         (350 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59080.1 68418.m07402 expressed protein                             27   4.6  
At5g43300.1 68418.m05292 glycerophosphoryl diester phosphodieste...    27   4.6  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    27   4.6  
At4g32730.2 68417.m05680 myb family transcription factor identic...    26   6.1  
At4g32730.1 68417.m05679 myb family transcription factor identic...    26   6.1  
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ...    26   6.1  

>At5g59080.1 68418.m07402 expressed protein
          Length = 135

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 346 PSPAAT*RGDHRWSFVQPGARSRRSGTRRPHGEHQQR 236
           PSP ++  G     F  P   S R G+   HG   QR
Sbjct: 27  PSPPSSSSGIFSTMFPHPSKGSARDGSNSKHGSQAQR 63


>At5g43300.1 68418.m05292 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 333

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 283 NVLQAVQKTNDGHPFKWLLEKD 348
           NV    +KT DG  F+W +EKD
Sbjct: 92  NVKPMWRKTKDGRIFEWKVEKD 113


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 222 CSRTPRCWCSPCGRRVPDLRERAPGCT 302
           CS   R +C+ C   + DL    P C+
Sbjct: 314 CSNEERVFCNHCATSIVDLHRSCPKCS 340


>At4g32730.2 68417.m05680 myb family transcription factor identical
           to PC-MYB1 GI:5678826 from [Arabidopsis thaliana];
          Length = 995

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 207 VPSCRCSRTPRCWCSPCGRRVPDL 278
           + S  C+   R W SPC  R PD+
Sbjct: 608 ISSMNCTTPLRLWDSPCHDRSPDV 631


>At4g32730.1 68417.m05679 myb family transcription factor identical
           to PC-MYB1 GI:5678826 from [Arabidopsis thaliana];
          Length = 776

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 207 VPSCRCSRTPRCWCSPCGRRVPDL 278
           + S  C+   R W SPC  R PD+
Sbjct: 608 ISSMNCTTPLRLWDSPCHDRSPDV 631


>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 667

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 243 WCSPCGRRVPDLRER 287
           WC  C RR+ DLR++
Sbjct: 561 WCDVCERRIADLRKK 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,777,313
Number of Sequences: 28952
Number of extensions: 75961
Number of successful extensions: 285
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)