Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A09
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58880.1 68416.m06562 F-box family protein contains F-box dom...    28   2.9  
At3g42190.1 68416.m04340 hypothetical protein                          28   2.9  
At2g27900.1 68415.m03382 expressed protein                             28   3.9  
At4g01240.1 68417.m00163 hypothetical protein                          27   5.1  
At3g45170.1 68416.m04875 zinc finger (GATA type) family protein ...    27   6.8  

>At3g58880.1 68416.m06562 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 454

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 367 LSL*EFQDCL---VLSRNFKYCF*CIKELEI 450
           L + EFQ  L    + ++F YCF C+KE+EI
Sbjct: 387 LEIREFQGTLREMEMIKHFYYCFLCLKEMEI 417


>At3g42190.1 68416.m04340 hypothetical protein
          Length = 695

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 125 VSSITGMACKPRTSSVALGTLRSPCTQARFNSR 27
           VS+   + C          +LR PC   RFNSR
Sbjct: 165 VSNSEDIGCNDGNDEFGFDSLRRPCPNVRFNSR 197


>At2g27900.1 68415.m03382 expressed protein
          Length = 1124

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 155 ITDSVAAFAPVSSITGMACKPRTSSVALGTLRSPCT 48
           ++ S+A    V S+TG +C P+   +  G++  PCT
Sbjct: 431 VSPSLATTQMVDSVTGSSCDPQDGGLLPGSI-PPCT 465


>At4g01240.1 68417.m00163 hypothetical protein 
          Length = 659

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -2

Query: 134 FAPVSSITGMACKPRTSSVALGTLRSPCTQARFNSRTPL 18
           FAPV S+     KP   S +L  L S  T A+FN  TPL
Sbjct: 189 FAPVESLE--LAKPCFPSPSLAFLISVATLAKFNYITPL 225


>At3g45170.1 68416.m04875 zinc finger (GATA type) family protein
           contains GATA-type zinc finger domain,
           INTERPRO:IPR000679
          Length = 204

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 36  KACLCAGRAQSP--QSDTRGAGLACHTCDGRHRRKR 137
           K+C   G  ++P  +   RGAG  C+ C  R+R  R
Sbjct: 115 KSCSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGR 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,019,111
Number of Sequences: 28952
Number of extensions: 193315
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)