Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A18
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39360.1 68415.m04831 protein kinase family protein contains ...    29   1.4  
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    27   7.2  
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea...    26   9.6  

>At2g39360.1 68415.m04831 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 815

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 238 RLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYF 342
           R V++  L   K N++++A KLV+KG++  + D F
Sbjct: 686 RPVIDPSLPREKVNLIEWAMKLVKKGKLEDIIDPF 720


>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +1

Query: 190 ARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYA----YKLVRKG 315
           A    +L  +GR E + L+   L AES  NV  +A    Y L+ KG
Sbjct: 85  ADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVDYDLLSKG 130


>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to damage-specific DNA-binding protein 2 (DDB2)
           [Mus musculus]
          Length = 516

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 22/49 (44%), Positives = 25/49 (51%)
 Frame = +1

Query: 190 ARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRD 336
           A I  E   EG G   +LV   L  ESK        KLV KGEIG+V+D
Sbjct: 105 APIPFESAYEGYGSYTQLVDTLLGIESK----SCRGKLV-KGEIGVVKD 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,413,976
Number of Sequences: 28952
Number of extensions: 149561
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)