Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A12
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops...    30   0.91 
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family...    29   1.2  
At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ...    29   1.2  
At3g10500.1 68416.m01260 no apical meristem (NAM) family protein...    29   2.1  
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i...    29   2.1  
At1g31170.1 68414.m03815 parB-like nuclease domain-containing pr...    29   2.1  
At3g09090.1 68416.m01069 defective in exine formation protein (D...    27   4.8  
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p...    27   6.4  
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ...    27   6.4  
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot...    27   8.5  
At3g45800.1 68416.m04957 hypothetical protein                          27   8.5  
At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical...    27   8.5  

>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
           thaliana, EMBL:AC007020
          Length = 745

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +3

Query: 3   AAEGVYPAPNLTLATPERR-LDGVSHNLKLVDGRYSAVATVTLNDADLPSPAEFICTLWI 179
           A++ ++  P  + + P RR   G+   + L   + ++++ V L+D+DLPS   F    ++
Sbjct: 10  ASQPLFHCPCSSSSRPRRRRFYGLHFPINLTSEKNNSLSIVALSDSDLPSRTAFSRRAFL 69

Query: 180 PQAKYAVRKEAIYYPGPISTTPEMPTAA 263
                 V   +++    +S   E  ++A
Sbjct: 70  LAPPLLVSAASLFLKPSVSLASEESSSA 97


>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
           protein common family member:At2g33490 [Arabidopsis
           thaliana]
          Length = 608

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 118 PLPSTMPIYHRLRNSSARSGYHKPNMPLGKKPFTIQD 228
           P PST   +H  + ++ R  +  P  P   KP T+ D
Sbjct: 412 PRPSTTDTHHHQQQAAGRHAFSGPLRPSSTKPITMAD 448


>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
           SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
           contains Pfam profiles PF00226: DnaJ domain, PF01556:
           DnaJ C terminal region, PF00684: DnaJ central domain (4
           repeats)
          Length = 517

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 121 LPSTMPIYHRLRNSSARSGYHKPNMPLGKKPFTIQDLLVQRLKCLRQLICSSQRQLVQK 297
           LP T+PI+ R+R      GY +  + +         L V R   L++ I SS R+L +K
Sbjct: 32  LPPTLPIFSRVRRFGISGGYRRRVITMAAGTDHYSTLNVNRNATLQE-IKSSYRKLARK 89


>At3g10500.1 68416.m01260 no apical meristem (NAM) family protein
           similar to  to NAC2 (GI:645671) [Arabidopsis thaliana];
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 549

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = +3

Query: 129 NDADLPSPAEFICTLWIPQAKYAVRKEAIYY----PGPISTTPEMPTA-ADMQLAAAVGS 293
           ++A      +   T + P  KY + K+A +     P P++   E PT  A ++L AA  S
Sbjct: 413 DEASCSKQVDADATEFEPDYKYPLLKKASHMLGAIPAPLANASEFPTKDAAIRLHAA-QS 471

Query: 294 KGNQLVPEANVTISKXNFKKVSGQN 368
            G+  V    +TIS  N     G+N
Sbjct: 472 SGSVHVTAGMITISDSNMGWSYGKN 496


>At2g21235.1 68415.m02522 bZIP protein-related similar to
           VirE2-interacting protein VIP1 [Arabidopsis thaliana]
           GI:7258340, tbZIP transcription factor [Arabidopsis
           thaliana] GI:17065884
          Length = 550

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 211 ASFLTAYLACGI-QSVQMNSAGDGKSASLRVTVATAEYLPSTSFKLCETPSS 59
           ASF  ++    I Q +   S+     AS+    +++ Y P TS   C TPSS
Sbjct: 79  ASFTPSFSFSNIHQMIPTPSSSHNSKASVSSASSSSFYFPQTSPSSCSTPSS 130


>At1g31170.1 68414.m03815 parB-like nuclease domain-containing
           protein contains Pfam profile PF02195: ParB-like
           nuclease domain
          Length = 125

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 140 IGIVEGNGCYRGISAIHQLQIMRNAVQPSFRCGQRKVRRG 21
           I ++E +G Y G S  H+ +  +    P+ RC   K+R+G
Sbjct: 79  IDVIEVDGTYYGFSGCHRYEAHQKLGLPTIRC---KIRKG 115


>At3g09090.1 68416.m01069 defective in exine formation protein
           (DEX1) identical to defective in exine formation
           [Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
           Pfam domain PF01839: FG-GAP repeat
          Length = 896

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 207 EAIYYPGPISTTPEMPTAADMQLAAAVGSKGNQLVPEANVTISKXNFKKVSGQNNISIXH 386
           EAI  P P      M   A+  LAA   + G++     NVT ++ +  K+SG  N ++  
Sbjct: 242 EAIVKPTPELHNSSMDAGAN-NLAANATTAGSRENLNRNVTTNEVDQSKISGDKNETVIK 300

Query: 387 L 389
           L
Sbjct: 301 L 301


>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
           putative / heterogeneous nuclear ribonucleoprotein,
           putative similar to Polypyrimidine tract-binding protein
           1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
           (hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
           sapiens} SP|P26599; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 429

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 243 PEMPTAADMQLAAAVGSKGNQLVPEANVTIS 335
           P  P+A D     AVG  G ++ PE+NV ++
Sbjct: 218 PVAPSAIDSTGQVAVGVDGKKMEPESNVLLA 248


>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 706

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 180 PQAKYAVRKEAIYYPGPISTTPEMPTAADMQLAAAVGSKGNQLVPEANVTISKXNFKKVS 359
           P+A  AV    +     ++  P  P+AA       +   GN  +P +++   + N   ++
Sbjct: 372 PRASSAVSASTMDMASVLNMLPGSPSAAQHSFTPPISPSGNGSMPHSSMGWPQQNIPALN 431

Query: 360 -GQNNISIXHL*STFN 404
              +NI +  L S+ N
Sbjct: 432 LPGSNIQLSRLRSSLN 447


>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
            similar to DNA helicase HEL308 [Homo sapiens]
            GI:19110782; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00476: DNA polymerase family A
          Length = 1548

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 259  QLICSSQ--RQLVQKVIS*FPRQTLLFLNXILKKYQDKITYLYXIYNLHLICV*PAYMCM 432
            QL C+S   ++ ++   S FP  T  +LN  +   Q+K    Y ++ L  + V  A +C+
Sbjct: 1364 QLECTSDEAKEKIRSFKSSFPAVTS-WLNETISFCQEKGWGCYRLFPL--LFVLNAVLCV 1420

Query: 433  PINLFYFYASKL 468
            P+N  + Y   L
Sbjct: 1421 PLNHIFIYIQTL 1432


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 20/73 (27%), Positives = 29/73 (39%)
 Frame = +3

Query: 102 YSAVATVTLNDADLPSPAEFICTLWIPQAKYAVRKEAIYYPGPISTTPEMPTAADMQLAA 281
           YS  A   L    +P  A    + W+P   +A     +Y  G  + T + PT+ D  L  
Sbjct: 305 YSDPACTNLGAPAVPPEAN---SQWLPYTDHAYNYPVVYSTGAPAATAQWPTSNDF-LPI 360

Query: 282 AVGSKGNQLVPEA 320
             G+     VP A
Sbjct: 361 DTGAPTFAKVPTA 373


>At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical to
           ethylene-insensitive3 GI:2224933 from [Arabidopsis
           thaliana]
          Length = 628

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 88  WWMADIPR*QPLPSTMPIYHRLRNSSARSGYHKPNMPLGKKPFTIQDL 231
           WW   +   +  P+ +  Y    N     G H+ N P+G  P T+Q+L
Sbjct: 137 WWKDKVRFDRNGPAAITKYQAENNIP---GIHEGNNPIGPTPHTLQEL 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,421,113
Number of Sequences: 28952
Number of extensions: 219011
Number of successful extensions: 568
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)