Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A03
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    28   2.9  
At5g47900.1 68418.m05917 hypothetical protein                          27   6.7  
At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)...    27   8.9  
At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)...    27   8.9  
At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2) ident...    27   8.9  
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    27   8.9  

>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -2

Query: 310 RLNYYMSIIDYYHLLIFFIQLMVDSLGIMLMSPLAVLAAWLSGR 179
           +L++ +S + Y+   +F+I  +VD LG+    P+ +  A+L  R
Sbjct: 14  QLHHVVSKMSYFDAFLFYIVHLVDKLGLWHRFPVLLGVAYLGLR 57


>At5g47900.1 68418.m05917 hypothetical protein 
          Length = 384

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = -3

Query: 186 PDVPSLV*WHKTTT*PRGLWHQLL----CLLA*HWYLFFIELFTNVFIFRSLILLCYT 25
           PD PS   W +    P GL   L+    CL+  H+    I    N+  +  + LLC T
Sbjct: 313 PDAPS---WCQAPFDPEGLLSSLMATVTCLVGLHYGHIIIHFKVNISFYEEVRLLCST 367


>At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 32  HNKINDLNIKTFVNNSMKNKYQCHASK 112
           H  IND+ +++ V N+MK+ ++    K
Sbjct: 179 HGHINDIELRSLVENAMKHYFELFRMK 205


>At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 32  HNKINDLNIKTFVNNSMKNKYQCHASK 112
           H  IND+ +++ V N+MK+ ++    K
Sbjct: 179 HGHINDIELRSLVENAMKHYFELFRMK 205


>At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2)
           identical to SP|Q9M9W8 Phospholipase D p2 (EC 3.1.4.4)
           (AtPLDp2) (Phospholipase D2 PHOX and PX containing
           domain) (Phospholipase D zeta 2) (PLDzeta2) {Arabidopsis
           thaliana}; similar to phospholipase D GB:BAA24577 from
           [Rattus norvegicus]; contains Pfam profile: PF00614
           phospholipase D, PF00169 PH domain, PF00787 PX domain
          Length = 1046

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 197 CMAFRTYPRWSNGTRQPRDPV 135
           C   R+  +WS GT QP D +
Sbjct: 695 CQIIRSVSQWSAGTSQPEDSI 715


>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 409 FVGFVLPVSRLSIWNRKVVLS 471
           F+G+VLP  ++S W   V+ S
Sbjct: 135 FIGYVLPWGQMSFWGATVITS 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,970,832
Number of Sequences: 28952
Number of extensions: 194734
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)