Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A24
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa...    33   0.32 
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote...    29   3.9  
At5g03010.1 68418.m00247 kelch repeat-containing protein contain...    29   3.9  
At3g19700.1 68416.m02495 leucine-rich repeat transmembrane prote...    29   5.2  
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain...    29   5.2  
At2g06140.1 68415.m00675 hypothetical protein                          28   6.9  
At5g67550.1 68418.m08518 expressed protein                             28   9.1  
At4g08810.1 68417.m01450 expressed protein                             28   9.1  
At1g74390.1 68414.m08618 exonuclease family protein contains exo...    28   9.1  

>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 1280

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 184  IADSKHAIISTGRMNALIEPCNRKQCIACVT 92
            I D+   I   G  NA+I PC+ + C  C+T
Sbjct: 1212 IEDNTCCICYAGEANAMIAPCSHRSCYGCIT 1242


>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
            kinase, putative 
          Length = 1102

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 480  DMRIQEHRILVLQIALKCADISNPCRP 560
            D RI  H + VL+IAL C  +S   RP
Sbjct: 1043 DERIVSHMLTVLKIALLCTSVSPVARP 1069


>At5g03010.1 68418.m00247 kelch repeat-containing protein contains
           Pfam PF01344: Kelch motif (1 repeat)
          Length = 232

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 396 KVLIMATDITRQHDYLSRFKKLLDTNTLDMRIQEHRILV 512
           ++L+ + D T Q+ YL+RFK  L TN   + I +   L+
Sbjct: 76  RILLQSHDPTVQNAYLNRFKPNLQTNACYVEIDKVSCLI 114


>At3g19700.1 68416.m02495 leucine-rich repeat transmembrane protein
            kinase, putative similar to leucine-rich receptor-like
            protein kinase GB:AAC36318 from [Malus domestica];
            contains leucine rich repeat (LRR) domains, Pfam:PF00560;
            contains protein kinase domain, Pfam:PF00069
          Length = 991

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 456  KLLDTNTLDMRIQEHRILVLQIALKCADISNPCRPWSVS 572
            KL+DT+  D   +E  + VL IAL C D S   RP+  S
Sbjct: 921  KLIDTSIED-EYKEDALKVLTIALLCTDKSPQARPFMKS 958


>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 898

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 375 EELKKHLKVLIMATDITR-QHDYLSRFKKLLDTNTLDMRIQEHRILVLQIALKCADISNP 551
           EEL++H+K L +  D  + +    S    LL+   LD++I+  R       L C ++SN 
Sbjct: 271 EELEEHVKNLKLELDNEKIKSSTASERVLLLEKEVLDLKIELDRTRREACNLFCPEVSNW 330

Query: 552 C 554
           C
Sbjct: 331 C 331


>At2g06140.1 68415.m00675 hypothetical protein 
          Length = 633

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 210 VNQGFLIATCNHLADLYRILEGTSENFSVLESHHWRAALSCIIESGLLEERPDLQEELKK 389
           VN G  + T   L D ++I E   +  +  ES  WR+  S   E G  + +   +EE KK
Sbjct: 124 VNVGLTVDTVESLLD-WKIEELEKKLTNSNESLDWRSNQSYQEEDGFPKAQALYEEETKK 182

Query: 390 HLKVLI 407
            ++ L+
Sbjct: 183 EIRFLV 188


>At5g67550.1 68418.m08518 expressed protein
          Length = 439

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 293 RIGKPSLACRS*LHHRERSLGRKTRSPRRVEETFKSVNHGD 415
           R+GK S   +S LHH+ RS+    +    +      ++HGD
Sbjct: 191 RLGKGSRLIQSFLHHKGRSIDLAIKISTSIASLAPWIHHGD 231


>At4g08810.1 68417.m01450 expressed protein
          Length = 552

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 400 TFKCFFNSSWRSGLSSKRP 344
           T+K F  S W SG++++RP
Sbjct: 196 TYKVFHTSGWHSGVNARRP 214


>At1g74390.1 68414.m08618 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 506

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 371 EIWSFFQETALDDATKSGTPMMAFQYGKVL*CP 273
           EI  F  ETA+   TKSG P    ++G +L CP
Sbjct: 12  EIAFFDLETAVP--TKSGEPFAILEFGAILVCP 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,633
Number of Sequences: 28952
Number of extensions: 362313
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)