Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A20
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36980.1 68417.m05240 expressed protein                             30   1.7  
At5g43310.1 68418.m05293 COP1-interacting protein-related contai...    29   3.9  
At1g53260.1 68414.m06035 hypothetical protein low similarity to ...    29   5.1  
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    28   6.8  
At2g46980.2 68415.m05869 expressed protein                             28   6.8  
At2g46980.1 68415.m05868 expressed protein                             28   6.8  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    24   7.4  
At4g02770.1 68417.m00377 photosystem I reaction center subunit I...    28   8.9  
At3g22070.1 68416.m02785 proline-rich family protein contains pr...    28   8.9  
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    28   8.9  

>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +1

Query: 250 RCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLP 378
           R   RS RSR   S   + SPSR  + SP RH       R LP
Sbjct: 504 RSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRHADALHLIRGLP 546


>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
           similarity to COP1-Interacting Protein 7 (CIP7)
           [Arabidopsis thaliana] GI:3327868
          Length = 1237

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 473 HGPPRVEPPRSNYTFAGAPFPPRAEVATP---PVIGSERLRLQVPGWRPGEQARRLEGDG 303
           H PP   P    YT  G P+ P    A+P   P   ++  R +  G R   +AR+     
Sbjct: 368 HSPPGTFPVFQGYTMQGMPYYPGYPGASPYPSPYPSTDDSR-RGSGQR---KARKHHSSC 423

Query: 302 AVSSDRPDRDRALRTSQRRCKS 237
           +  S+  D++R    S RR KS
Sbjct: 424 SEDSESEDQERDNEKSSRRRKS 445


>At1g53260.1 68414.m06035 hypothetical protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 358

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 467 PPRVEPPRSNYTFAGAPFPP 408
           PP ++PP  N  + G P PP
Sbjct: 216 PPHIQPPNMNQNYRGPPPPP 235


>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 622 KQPWPVSICVSRKVRHPWSRPTQSARTGRTASTVR 518
           + P PV +CV R  R P   P  ++R  R   TVR
Sbjct: 338 RPPSPVVLCVPRAPRPPPPSPVSNSRARRGFPTVR 372


>At2g46980.2 68415.m05869 expressed protein
          Length = 516

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 393 SDLRSRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPS 509
           S +  +  GR    VV+ R+ HSR+     WSR+ A  S
Sbjct: 318 SVMPKKQRGRRKNTVVKCRKAHSRKKDEADWSRKEASKS 356


>At2g46980.1 68415.m05868 expressed protein
          Length = 516

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 393 SDLRSRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPS 509
           S +  +  GR    VV+ R+ HSR+     WSR+ A  S
Sbjct: 318 SVMPKKQRGRRKNTVVKCRKAHSRKKDEADWSRKEASKS 356


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 24.2 bits (50), Expect(2) = 7.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 491 ARPRLQHGPPRVEPPRSNYTFAGA 420
           +RP     PP V PP    T  GA
Sbjct: 540 SRPNAAFSPPTVSPPAHGCTACGA 563



 Score = 22.2 bits (45), Expect(2) = 7.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 440 NYTFAGAPFPPRAEVATPP 384
           ++TF GA  PP A   TPP
Sbjct: 572 HFTFNGATSPPSA-ATTPP 589


>At4g02770.1 68417.m00377 photosystem I reaction center subunit II,
           chloroplast, putative / photosystem I 20 kDa subunit,
           putative / PSI-D, putative (PSAD1) similar to SP|P12353
           Photosystem I reaction center subunit II, chloroplast
           precursor (Photosystem I 20 kDa subunit) (PSI-D)
           {Spinacia oleracea}; contains Pfam profile PF02531: PsaD
          Length = 208

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
 Frame = -3

Query: 542 RADRLDGSEAGRRVCQAARPRLQHGPPRVEPPRSNYTFAGAP--FPPRAEVATPPVIGSE 369
           RA++ D S A           +   PP+++P   +  FAG+      +A+V    VI   
Sbjct: 44  RAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWN 103

Query: 368 RLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRALRTSQRRCKSHYPMTY 219
             + Q+     G  A   EG   +   R ++  AL T   R +S Y +TY
Sbjct: 104 SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT---RLRSKYKITY 150


>At3g22070.1 68416.m02785 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 178

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 485 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPP 384
           P   + PP   PP  +     AP PP  ++  PP
Sbjct: 113 PSTPNPPPEFSPPPPDLDTTTAPPPPSTDIPIPP 146


>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 449 PRSNYTFAGAPFPP-RAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRD 273
           P S+  FAG P     + +  P    S++ +LQ P  +P  +  + E +  +   +   D
Sbjct: 13  PESDLCFAGKPMSVVESTIRWPHRYQSKKTKLQAPTKKPANKGGKKEDEEIIKQAKCHFD 72

Query: 272 RAL 264
           +AL
Sbjct: 73  KAL 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,873,020
Number of Sequences: 28952
Number of extensions: 276517
Number of successful extensions: 1009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)