Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B06
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR cla...    30   2.1  
At3g49290.1 68416.m05387 expressed protein                             28   6.3  
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    28   8.4  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   8.4  
At3g10310.1 68416.m01237 kinesin motor protein-related similar t...    28   8.4  

>At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 853

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = +1

Query: 43  HKMSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHL 222
           H  ST   +  P LL+ A      CE +  L     S    YD +   D  I +NLT +L
Sbjct: 718 HGTSTKISLFTPTLLSFAACILISCERSFYLQFPAFS----YDWNRKDDEVISINLTPNL 773

Query: 223 RHANIRESESTV 258
             ++  E E TV
Sbjct: 774 NLSSEIEEEETV 785


>At3g49290.1 68416.m05387 expressed protein
          Length = 312

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -1

Query: 448 TDPLLETRXGERSPRRWLXXR---LAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNS 281
           T P  E      SP R+   R   +A  + AS S P TP+K  S TP+R  S   RS S
Sbjct: 207 TIPKKEQDKRSVSPHRFPLLRSGSVATRKSASISRPTTPSKSRSITPIRYPSEPRRSAS 265


>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 249 LGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHEG 136
           LGL N S S   G    D G+GGG P +  +     EG
Sbjct: 24  LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEG 61


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 156 PRNVRSGLPPRLQNRSQPDPA 218
           PR+  +  PPRL NR+ P PA
Sbjct: 75  PRSPSTSTPPRLGNRNPPPPA 95


>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
           carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
          Length = 897

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 267 GRSSNELDRQTTELERRGVGLQHLAGVLGTLVEA*RGTAKRXCNHRRGLRSPXRVSNNGS 446
           G S N++   + + +  G G  H+   L T+ +   G+ KR  N     RSP  V+NN S
Sbjct: 781 GASRNDIQMISVDSKTNGKG-SHIRKSLRTIGKLINGSEKRKENIPADPRSPLGVANNFS 839


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,359,444
Number of Sequences: 28952
Number of extensions: 230624
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)