Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A17
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17...    31   1.0  
At1g08170.1 68414.m00902 histone H2B family protein similar to h...    30   1.8  
At2g33690.1 68415.m04129 late embryogenesis abundant protein, pu...    30   2.4  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    29   4.2  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    29   4.2  
At1g53010.1 68414.m06001 zinc finger (C3HC4-type RING finger) fa...    29   4.2  
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ...    29   5.5  
At1g61850.1 68414.m06979 patatin family protein similar to membr...    28   7.3  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    28   9.7  
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina...    28   9.7  

>At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17
           (CLE17)
          Length = 99

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 386 LGASITPPPPFAQSRCSTSPYRGP 457
           L AS  PPPP    R ST+P+RGP
Sbjct: 53  LVASPPPPPPRKALRYSTAPFRGP 76


>At1g08170.1 68414.m00902 histone H2B family protein similar to
           histone H2B from Chlamydomonas reinhardtii [SP|P54347,
           SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
           SP|P16868]; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 243

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 361 TTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAPK 462
           TT+ IP+  R  ++P P   P+ + D+P P  P+
Sbjct: 79  TTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPE 112


>At2g33690.1 68415.m04129 late embryogenesis abundant protein,
           putative / LEA protein, putative similar to responsive
           to water deficit, novel late embryogenesis abundant-like
           protein PvLEA-18 (GI:2347086) [Phaseolus vulgaris]
          Length = 71

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 471 IFDLRGPRYGLVEHRDWANG-GGGVIDAPSREGDA 370
           I D +   YG   H+D   G GGG  DAP+  GDA
Sbjct: 23  IEDYKKNAYGTSGHQDVKPGHGGGTTDAPTPSGDA 57


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 340 KRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAPK 462
           K G P + T S P P +  +  +P+  P+T    P P APK
Sbjct: 206 KSGSPVSPTTSPPAPPKSTSPVSPSSAPMT--SPPAPMAPK 244


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +2

Query: 386 LGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPSF*DVSTR 565
           +  S++PPPP      ST P  G R     ASPS     +   +  ++  PPS   +ST 
Sbjct: 65  VNVSLSPPPPPRSPSTSTPPRLGNRNPPPPASPSGQEPTTPTMTPGFSLSPPSPSRLSTG 124

Query: 566 *YVG 577
             VG
Sbjct: 125 AVVG 128


>At1g53010.1 68414.m06001 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 178

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -3

Query: 369 QRGVRRATPFEEHRCAFRGVDVDAPLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEE 190
           QRG +RA     H     G+     LP+    G  RGLK S+ + LLP  +V  G   E+
Sbjct: 65  QRGQQRARIVTYHTIISTGLR----LPDFEREGKKRGLKQSVIETLLPKLLVGQGNHEED 120

Query: 189 RQMGL 175
            +  L
Sbjct: 121 EEKSL 125


>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
           WD-40 repeats (PF00400); similar to pre-mRNA splicing
           factor PRP17 (SP:O60508) [Homo sapiens]
          Length = 457

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 31  YLSNRSFLISSRGNAFPAPXTSQPESRKAPPSPRLLFSLYINDIPR 168
           Y+S R   + +  +  P P  S   S+K   SP +L S+  +D+PR
Sbjct: 84  YVSKRERSLLASLSTIPTPDQSSDLSQKPYSSPTVLGSISDSDVPR 129


>At1g61850.1 68414.m06979 patatin family protein similar to
           membrane-associated calcium-independent phospholipase A2
           gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
           Patatin domain PF01734, PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 1265

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 61  SRGNAFPAPXTSQPESRKAPPSPRLLFS 144
           S G AFP P TS   +   PPSP LLF+
Sbjct: 903 SPGTAFPTPFTSPLITGSLPPSP-LLFT 929


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 352 PPNTTLSIPLPTRRVNNPAPAVRP-ITMFDQPIPWAP 459
           PP  T S+P PT  V+ P P   P +     P+P  P
Sbjct: 137 PPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDP 173


>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 772

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 429 DVRPAHTVGPEGQIFRRHPRQ*DDIPPPHQ 518
           D++P+    P+ +I+RR PR+     PPHQ
Sbjct: 407 DLKPS-AFDPKDKIWRRFPREGTKYTPPHQ 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,126,244
Number of Sequences: 28952
Number of extensions: 430538
Number of successful extensions: 1521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)