Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A15
(861 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 275 3e-74
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 268 4e-72
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 268 4e-72
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 31 0.99
At1g29195.1 68414.m03572 expressed protein 30 1.7
At2g47890.2 68415.m05981 zinc finger (B-box type) family protein 28 9.2
At2g47890.1 68415.m05982 zinc finger (B-box type) family protein 28 9.2
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 275 bits (674), Expect = 3e-74
Identities = 124/205 (60%), Positives = 157/205 (76%), Gaps = 1/205 (0%)
Frame = +1
Query: 37 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 216
HRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LT+F+GYKAGMTH+VR+ ++
Sbjct: 3 HRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEK 62
Query: 217 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 396
PGSK++KKE EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYKNW
Sbjct: 63 PGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNW 122
Query: 397 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIM 573
+ E G+K I+ +KM +YCSV+RV+AHTQ++ +K +QKKAH+
Sbjct: 123 AKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLN 182
Query: 574 EIQLNGGTIEDKVKWAREHLEKPIP 648
EIQ+NGG I KV +A EK +P
Sbjct: 183 EIQINGGDIAKKVDYACSLFEKQVP 207
Score = 65.7 bits (153), Expect = 4e-11
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = +2
Query: 650 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKKHKGLRKVACIGAWH 805
VD++F +DEMID I +RW +LPRK H+GLRKVACIGAWH
Sbjct: 208 VDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWH 259
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 268 bits (656), Expect = 4e-72
Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 1/205 (0%)
Frame = +1
Query: 37 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 216
HRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE ++
Sbjct: 3 HRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEK 62
Query: 217 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 396
PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW
Sbjct: 63 PGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNW 122
Query: 397 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIM 573
+ E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH+M
Sbjct: 123 AKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMM 182
Query: 574 EIQLNGGTIEDKVKWAREHLEKPIP 648
EIQ+NGGTI KV +A EK IP
Sbjct: 183 EIQINGGTIAQKVDFAYSFFEKQIP 207
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/52 (51%), Positives = 34/52 (65%)
Frame = +2
Query: 650 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKKHKGLRKVACIGAWH 805
+++VF +DEMID I +RW +LPRK H+GLRKVACIGAWH
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWH 259
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 268 bits (656), Expect = 4e-72
Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 1/205 (0%)
Frame = +1
Query: 37 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 216
HRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE ++
Sbjct: 3 HRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEK 62
Query: 217 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 396
PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW
Sbjct: 63 PGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNW 122
Query: 397 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIM 573
+ E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH+M
Sbjct: 123 AKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMM 182
Query: 574 EIQLNGGTIEDKVKWAREHLEKPIP 648
EIQ+NGGTI KV +A EK IP
Sbjct: 183 EIQINGGTIAQKVDFAYSFFEKQIP 207
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/52 (51%), Positives = 34/52 (65%)
Frame = +2
Query: 650 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKKHKGLRKVACIGAWH 805
+++VF +DEMID I +RW +LPRK H+GLRKVACIGAWH
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWH 259
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -1
Query: 390 FVEATSTVFRHMLRPDSQKSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTV 211
F T T R+ P A ++ ++N + T+ + L G++L+ LFL+ F
Sbjct: 46 FSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLA 103
Query: 210 RFSNHVGHTGLITD 169
+ H G+ ++ D
Sbjct: 104 EIAAHAGYDYVVVD 117
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 157 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 279
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At2g47890.2 68415.m05981 zinc finger (B-box type) family protein
Length = 237
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = -2
Query: 788 RQLS*DPCVSYGVASLCANEK*HLCILCPW*HQ-CSQSFHLGQTQNRPGIGFSRC 627
R L D C + C E+ LC C W H S S H RP GF+ C
Sbjct: 52 RSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTASSSLH----SRRPFEGFTGC 102
>At2g47890.1 68415.m05982 zinc finger (B-box type) family protein
Length = 332
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = -2
Query: 788 RQLS*DPCVSYGVASLCANEK*HLCILCPW*HQ-CSQSFHLGQTQNRPGIGFSRC 627
R L D C + C E+ LC C W H S S H RP GF+ C
Sbjct: 52 RSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTASSSLH----SRRPFEGFTGC 102
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,562,704
Number of Sequences: 28952
Number of extensions: 423540
Number of successful extensions: 1067
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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