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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A02
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    33   0.24 
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ...    33   0.32 
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    32   0.56 
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr...    32   0.56 
At4g25910.1 68417.m03725 nitrogen fixation protein, putative nit...    31   1.3  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    30   2.2  
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    29   3.0  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    29   3.9  
At5g46640.1 68418.m05744 DNA-binding family protein contains a A...    29   5.2  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   6.9  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    28   6.9  
At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein bet...    28   9.1  
At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein bet...    28   9.1  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   9.1  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    28   9.1  
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    28   9.1  

>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 483 PFILSHYYWRSRPYASSHPPLAISATSTRSSNPRIPYTNHPRLNI 617
           P   SHY      Y+S H   A S+TS  S+ P  PY+++ R+NI
Sbjct: 308 PHYPSHYQNPEPYYSSPHSAPAPSSTSFSSAPPPPPYSSNGRINI 352


>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
           glutamine phosphoribosylpyrophosphate amidotransferase,
           putative / phosphoribosyldiphosphate 5-amidotransferase,
           putative similar to amidophosphoribosyltransferase
           [Arabidopsis thaliana] GI:469195; contains Pfam profiles
           PF00156: Phosphoribosyl transferase domain, PF00310:
           Glutamine amidotransferases class-II
          Length = 532

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +1

Query: 472 VLATPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPEFHTPTTP--DLT-SISINPLNA 642
           V+A P S   T+  L    +A +P++  L +  +    F  PT    D    + ++P+ A
Sbjct: 354 VIAVPDSG--TVAALGYAAKAGVPFQIGLLRSHYAKRTFIEPTQEIRDFAVKVKLSPVRA 411

Query: 643 VLEGVRAGVKASVVIRGSISV 705
           VLEG R  V    ++RG+ S+
Sbjct: 412 VLEGKRVVVVDDSIVRGTTSL 432


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 21/66 (31%), Positives = 26/66 (39%)
 Frame = +2

Query: 527 IKPPSPGDLGYINPIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAPSAY 706
           +KPP+        P  K P S  +PP T  P PS P  P+ K       PP  +  P   
Sbjct: 117 VKPPTKPPPSTPKPPTKPPPSTPKPPTT-KPPPSTPKPPHHKPPPTPCPPPTPTPTPPVV 175

Query: 707 LTPLVT 724
             P  T
Sbjct: 176 TPPTPT 181


>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 371

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 514 LALMHQATL--PWRSRLHQPDHQIPEFHTPTTPDLTSISINPLNAVLEGVRAGV 669
           LAL+   TL  PW    + P H++PEFH+P   +      NP    LEGV   +
Sbjct: 92  LALLSLQTLEKPWELENYLP-HEVPEFHSPIHSETNHYYHNP---SLEGVNEAI 141


>At4g25910.1 68417.m03725 nitrogen fixation protein, putative
           nitrogen fixation protein nifU (SP:Q43885) [Anabaena
           sp.]; contains Pfam profile: PF01106 NifU-like domain
          Length = 236

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = +1

Query: 604 PDLTSISINPLNAVLEGVRAGVKASVVIRGSISVSHPPRHWAWLKEFRPLISK*MMNHKL 783
           P+  S  +N  NA+ + +    K S  +RG     H    ++WL+  RPL  + +  H  
Sbjct: 24  PNFRSSLLNSKNAISDTLGVSSKCSTFLRGQFQRIH----FSWLQHTRPLRKRTVFGHVS 79

Query: 784 RALLVVIPRILRSLPPITP 840
             + +    + R L  + P
Sbjct: 80  CVMPLTEENVERVLDEVRP 98


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +2

Query: 533 PPSPGDLGYINPIIKSP---NSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAP 697
           PP P  + Y  P+ KSP   + ++ PP T  P P      Y    +P   PP   ++P
Sbjct: 718 PPPPSPV-YYPPVAKSPPPPSPVYYPPVTQSPPPPSTPVEYHPPASPNQSPPPEYQSP 774


>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 566 PIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAPSAYLTPLVTGHG 733
           P++  P  +  PP T  P    P  P      PGL PP+++  P   L P+ T  G
Sbjct: 109 PVVYPPPIVRPPPITRPPIIIPPIQPPPVTTPPGLLPPITT--PPGLLPPVTTPPG 162


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
 Frame = +2

Query: 533 PPSPGDLGY--INPIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAPSAY 706
           PP P  L Y  + P    P+ ++ PP T  P P  P   Y     P   PP     PS  
Sbjct: 612 PPPPSPLYYPPVTPSPPPPSPVYYPPVT--PSPPPPSPVYYPPVTPSPPPPSPVYYPSET 669

Query: 707 LTP 715
            +P
Sbjct: 670 QSP 672


>At5g46640.1 68418.m05744 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 386

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 489 ILSHYYWRSRPYASSHPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSPE 638
           ++SHY     P A++ P +  ++TS    +PR+P+ N  +    FHQ  +
Sbjct: 20  LMSHY---RNPNAAASPLMVPTSTSQPIQHPRLPFGNQQQSQT-FHQQQQ 65


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 536 PSPGDLGYINPIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPG-LKPPLSSEAPSAYLT 712
           P P       P   S NS   PP +  P PS+P         PG L PPL   +PSA +T
Sbjct: 34  PPPTTTPSSPPPSPSTNSTSPPPSSPLP-PSLP-----PPSPPGSLTPPLPQPSPSAPIT 87

Query: 713 P 715
           P
Sbjct: 88  P 88


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = +2

Query: 530 KPPSPGDLGYINPIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPG--LKPPLSSEAPSA 703
           KPP+     Y  PI K P   + PP    P    P   Y     P    KPP  + +P  
Sbjct: 74  KPPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYSPPI 133

Query: 704 YLTPL 718
           Y  P+
Sbjct: 134 YPPPI 138


>At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           EMBL:AB017502
          Length = 624

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 759 GNKGAKLL*PCPVTRGVRYADGASDDNGGFNPGANSF*YGVQGIDGN 619
           G  GAK L P P   G     GA  DN G+  G  +  +  QG++GN
Sbjct: 415 GKTGAKPLLPLPKKSGKILVAGAHADNLGYQCGGWTITW--QGLNGN 459


>At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           EMBL:AB017502
          Length = 624

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 759 GNKGAKLL*PCPVTRGVRYADGASDDNGGFNPGANSF*YGVQGIDGN 619
           G  GAK L P P   G     GA  DN G+  G  +  +  QG++GN
Sbjct: 415 GKTGAKPLLPLPKKSGKILVAGAHADNLGYQCGGWTITW--QGLNGN 459


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 313 QSLPNVSSIIKGYRDAY 363
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +2

Query: 524 CIKPPSPGDLGYINPIIKSPNSIHQPPQT*HPFPSI--P*TPY*KEFAPGLKPPLSSEAP 697
           C  PP    L  ++P    P S   PP+   PFP++  P  P    F   L PPL    P
Sbjct: 27  CCPPPLVFPLLPLSPPPSPPPSPSSPPRLPPPFPALFPPEPPLPPRFE--LPPPLFPPPP 84

Query: 698 SAYLTP 715
              L P
Sbjct: 85  LPRLPP 90


>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 533 PPSPGDLGYI-NPIIKS--PNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAPSA 703
           PP P   GY+ +P  +   PN  HQP    H  P     PY ++  PG +P  S  A SA
Sbjct: 393 PPPP--YGYMPSPYQQQYPPNHHHQPSPMQHYAPPPAAYPYPQQPGPGSRPAPSPTAVSA 450


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,271,840
Number of Sequences: 28952
Number of extensions: 407456
Number of successful extensions: 1142
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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