Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C02_e11_06.seq
         (1512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44130.1 68414.m05097 nucellin protein, putative similar to n...    30   4.6  
At5g16230.1 68418.m01896 acyl-[acyl-carrier-protein] desaturase,...    29   8.0  
At1g13460.2 68414.m01575 serine/threonine protein phosphatase 2A...    29   8.0  
At1g13460.1 68414.m01574 serine/threonine protein phosphatase 2A...    29   8.0  

>At1g44130.1 68414.m05097 nucellin protein, putative similar to
           nucellin GI:2290202 from [Hordeum vulgare]
          Length = 405

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 317 ELNLNDLVLIKETNTSPLCWRLGRVCKLFLGADNIPRVAELSTVNG 454
           +L ++ L + KE  T P+CW+  +  K  L   N  +   ++  NG
Sbjct: 288 DLKVSPLKVAKEDKTLPICWKGAKPFKSVLEVKNFFKTITINFTNG 333


>At5g16230.1 68418.m01896 acyl-[acyl-carrier-protein] desaturase,
           putative / stearoyl-ACP desaturase, putative similar to
           Acyl-[acyl-carrier protein] desaturase from Spinacia
           oleracea SP|P28645, Ricinus communis SP|P22337; contains
           Pfam profile PF03405 Fatty acid desaturase
          Length = 401

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 254 RRTSEYICELQQRSKWRVKCRELNLNDLVLIKETNTSPLCWRLGRVCKL 400
           RR  EY+C L Q    R+K  E   ND V +    +    W  GR  KL
Sbjct: 357 RRAQEYLCTLPQ----RIKRLEERANDRVKLVSKPSVSFSWVFGRDVKL 401


>At1g13460.2 68414.m01575 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 492

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 261 VRRVQKCCRIFSRSDYGKNITDKTIVR 181
           VR++  CC +F  SD  KN+ +K I R
Sbjct: 89  VRKLSLCCVVFDFSDPTKNVKEKDIKR 115


>At1g13460.1 68414.m01574 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 492

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 261 VRRVQKCCRIFSRSDYGKNITDKTIVR 181
           VR++  CC +F  SD  KN+ +K I R
Sbjct: 89  VRKLSLCCVVFDFSDPTKNVKEKDIKR 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,105,233
Number of Sequences: 28952
Number of extensions: 446826
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)