Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B12_e90_04.seq
(1494 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 291 6e-79
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 279 4e-75
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 279 4e-75
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 230 2e-60
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 230 2e-60
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 230 2e-60
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 229 3e-60
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 225 6e-59
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 216 3e-56
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 208 9e-54
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 205 5e-53
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 193 3e-49
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 191 1e-48
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 190 2e-48
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 179 5e-45
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 179 5e-45
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 168 9e-42
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 157 2e-38
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 154 2e-37
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 144 2e-34
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 141 9e-34
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 138 7e-33
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 125 9e-29
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 123 3e-28
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 123 3e-28
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 119 6e-27
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 119 6e-27
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 118 8e-27
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 118 8e-27
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 117 2e-26
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 116 4e-26
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 115 7e-26
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 115 9e-26
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 114 1e-25
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 114 1e-25
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 111 1e-24
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 109 6e-24
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 108 1e-23
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 107 1e-23
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 107 2e-23
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 106 3e-23
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 106 4e-23
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 105 6e-23
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 105 7e-23
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 105 1e-22
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 104 1e-22
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 104 2e-22
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 103 2e-22
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 103 3e-22
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 102 7e-22
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 101 2e-21
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 95 1e-19
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 93 4e-19
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 93 6e-19
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 91 2e-18
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 90 4e-18
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 86 6e-17
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 83 3e-16
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 79 1e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 78 1e-14
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 76 5e-14
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 63 4e-10
At2g28600.1 68415.m03476 expressed protein 60 3e-09
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 58 1e-08
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 57 3e-08
At3g58460.1 68416.m06516 rhomboid family protein / ubiquitin-ass... 31 1.5
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 30 3.4
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 30 3.4
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 30 4.5
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 6.0
At3g59140.1 68416.m06593 ABC transporter family protein putative... 29 6.0
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 29 6.0
At2g39180.1 68415.m04812 protein kinase family protein contains ... 29 7.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 291 bits (715), Expect = 6e-79
Identities = 136/207 (65%), Positives = 168/207 (81%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
+G++L+G+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ AS+
Sbjct: 135 KGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASK 194
Query: 291 FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
FG+SS ++ TC++GG PK Q RDL++GVEIVIATPGRLID +E TNL+R TYLVLDE
Sbjct: 195 FGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDE 254
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSA 650
ADRMLDMGF+PQIRKI+ IRPDRQTL WSATWPKEV +L++ +L + ++ IGS L A
Sbjct: 255 ADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKA 314
Query: 651 NHNILQIVDVCQEHEKENKLNVLLQEI 731
N I QIVDV E +K NKL LL++I
Sbjct: 315 NRAIRQIVDVISESQKYNKLVKLLEDI 341
Score = 31.1 bits (67), Expect = 2.0
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 755 KTIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEGR 901
+ ++F++TK+ GWPA+ +H DK + F+ G+
Sbjct: 346 RILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGK 394
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 279 bits (683), Expect = 4e-75
Identities = 131/207 (63%), Positives = 165/207 (79%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
+G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + +
Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
Query: 291 FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID LE TNL+R TYLVLDE
Sbjct: 261 FGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDE 320
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSA 650
ADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV LA +L D + IGS L A
Sbjct: 321 ADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKA 380
Query: 651 NHNILQIVDVCQEHEKENKLNVLLQEI 731
N +I Q++++ EK N+L LL+++
Sbjct: 381 NQSINQVIEIVPTPEKYNRLLTLLKQL 407
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 755 KTIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEGR 901
K +IFVETKR GWPA+ +H DK + + FK GR
Sbjct: 412 KILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGR 460
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 279 bits (683), Expect = 4e-75
Identities = 131/207 (63%), Positives = 165/207 (79%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
+G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + +
Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
Query: 291 FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID LE TNL+R TYLVLDE
Sbjct: 261 FGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDE 320
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSA 650
ADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV LA +L D + IGS L A
Sbjct: 321 ADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKA 380
Query: 651 NHNILQIVDVCQEHEKENKLNVLLQEI 731
N +I Q++++ EK N+L LL+++
Sbjct: 381 NQSINQVIEIVPTPEKYNRLLTLLKQL 407
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 755 KTIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEGR 901
K +IFVETKR GWPA+ +H DK + + FK GR
Sbjct: 412 KILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGR 460
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 230 bits (563), Expect = 2e-60
Identities = 117/225 (52%), Positives = 161/225 (71%), Gaps = 1/225 (0%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
QG+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A +
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVK 252
Query: 291 FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
FG SS + TC++GGAPK Q RDLERG +IV+ATPGRL D LE +L++ +YLVLDE
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDE 312
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSL-QLS 647
ADRMLDMGFEPQIRKI+ +I RQTLM++ATWPK VRK+A D L + Q+NIG++ +L
Sbjct: 313 ADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELV 372
Query: 648 ANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLK 782
AN +I Q ++V EK+ + L++I ++Q+PG++ + K
Sbjct: 373 ANKSITQHIEVVAPMEKQRR----LEQILRSQEPGSKVIIFCSTK 413
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 230 bits (563), Expect = 2e-60
Identities = 117/225 (52%), Positives = 161/225 (71%), Gaps = 1/225 (0%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
QG+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A +
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVK 252
Query: 291 FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
FG SS + TC++GGAPK Q RDLERG +IV+ATPGRL D LE +L++ +YLVLDE
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDE 312
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSL-QLS 647
ADRMLDMGFEPQIRKI+ +I RQTLM++ATWPK VRK+A D L + Q+NIG++ +L
Sbjct: 313 ADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELV 372
Query: 648 ANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLK 782
AN +I Q ++V EK+ + L++I ++Q+PG++ + K
Sbjct: 373 ANKSITQHIEVVAPMEKQRR----LEQILRSQEPGSKVIIFCSTK 413
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 230 bits (563), Expect = 2e-60
Identities = 117/225 (52%), Positives = 161/225 (71%), Gaps = 1/225 (0%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
QG+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A +
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVK 252
Query: 291 FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
FG SS + TC++GGAPK Q RDLERG +IV+ATPGRL D LE +L++ +YLVLDE
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDE 312
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSL-QLS 647
ADRMLDMGFEPQIRKI+ +I RQTLM++ATWPK VRK+A D L + Q+NIG++ +L
Sbjct: 313 ADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELV 372
Query: 648 ANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLK 782
AN +I Q ++V EK+ + L++I ++Q+PG++ + K
Sbjct: 373 ANKSITQHIEVVAPMEKQRR----LEQILRSQEPGSKVIIFCSTK 413
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 229 bits (561), Expect = 3e-60
Identities = 114/206 (55%), Positives = 152/206 (73%), Gaps = 1/206 (0%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
Q +++V +A+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A
Sbjct: 471 QSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALR 529
Query: 291 FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
FG SS + TC++GGAPK Q ++LERG +IV+ATPGRL D LE + Q+ + LVLDE
Sbjct: 530 FGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDE 589
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSL-QLS 647
ADRMLDMGFEPQIRKI+++I P RQTLM++ATWPKEVRK+A D L + VQ+NIG + +L+
Sbjct: 590 ADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELA 649
Query: 648 ANHNILQIVDVCQEHEKENKLNVLLQ 725
AN I Q V+V + EKE +L +L+
Sbjct: 650 ANKAITQYVEVVPQMEKERRLEQILR 675
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 225 bits (550), Expect = 6e-59
Identities = 113/225 (50%), Positives = 160/225 (71%), Gaps = 1/225 (0%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
Q +++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A +
Sbjct: 265 QNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALK 323
Query: 291 FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
FG SS + C++GGAPK Q +++ERGV+IV+ATPGRL D LE +L + +YLVLDE
Sbjct: 324 FGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDE 383
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSL-QLS 647
ADRMLDMGFEPQIRKI++++ RQTLM++ATWPKEVRK+A D L + Q+NIG++ +L
Sbjct: 384 ADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELV 443
Query: 648 ANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLK 782
AN +I Q ++V EK ++ L++I ++Q+PG++ + K
Sbjct: 444 ANKSITQTIEVLAPMEKHSR----LEQILRSQEPGSKIIIFCSTK 484
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 216 bits (528), Expect = 3e-56
Identities = 118/275 (42%), Positives = 173/275 (62%), Gaps = 3/275 (1%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++G+A+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A +F
Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
+ +R + V+GG K EQ ++L+ G EIV+ATPGRLID L+ + R +YLVLDEA
Sbjct: 325 SKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEA 384
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSAN 653
DRM D+GFEPQ+R I+ QIRPDRQTL++SAT P +V KLA + L D +++ +G + + AN
Sbjct: 385 DRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM-AN 443
Query: 654 HNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKRXTXPEISDDMDGQL 833
+I Q+V+V + KL LL+++ D G +L K+ T EI +
Sbjct: 444 EDITQVVNVIPSDAE--KLPWLLEKLPGMIDEGD----VLVFASKKATVDEIEAQLTLNS 497
Query: 834 CACTXTNTARKG*SXXPILKRV---VSSILVATDV 929
+ + S L++ V +L+ATDV
Sbjct: 498 FKVAALHGDKDQASRMETLQKFKSGVHHVLIATDV 532
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to
RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 208 bits (507), Expect = 9e-54
Identities = 104/211 (49%), Positives = 145/211 (68%), Gaps = 3/211 (1%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
+ G++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 430 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDI 489
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL--EKG-TTNLQRCTY 455
+F + + V+GG+ +Q +L+RG EIV+ TPGR+ID L G TNL+R TY
Sbjct: 490 RKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTY 549
Query: 456 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGS 635
LV+DEADRM DMGFEPQI +I+ IRPDRQT+++SAT+P++V LA L V+I +G
Sbjct: 550 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGG 609
Query: 636 LQLSANHNILQIVDVCQEHEKENKLNVLLQE 728
+ N +I Q+V++ E E+ ++L LL E
Sbjct: 610 RSV-VNKDITQLVEIRPESERFSRLLELLGE 639
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 205 bits (501), Expect = 5e-53
Identities = 104/211 (49%), Positives = 144/211 (68%), Gaps = 3/211 (1%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
+ G++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 563 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDI 622
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL--EKG-TTNLQRCTY 455
+F +R V+GG+ +Q +L+RG EIV+ TPGR+ID L G TNL+R T+
Sbjct: 623 RKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTF 682
Query: 456 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGS 635
LV+DEADRM DMGFEPQI +II IRP+RQT+++SAT+P++V LA L V+I +G
Sbjct: 683 LVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGG 742
Query: 636 LQLSANHNILQIVDVCQEHEKENKLNVLLQE 728
+ N +I Q+V+V E ++ +L LL E
Sbjct: 743 RSV-VNKDITQLVEVRPESDRFLRLLELLGE 772
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 193 bits (470), Expect = 3e-49
Identities = 99/234 (42%), Positives = 150/234 (64%), Gaps = 5/234 (2%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQI 272
L G++L+G+A+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
Query: 273 QQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCT 452
V E G +++ CV+GG+ K Q + GV+IVI TPGRL D +E L +
Sbjct: 208 SDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVS 267
Query: 453 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLX-DYVQINI 629
++VLDEADRMLDMGFE +R I+ RQ +M+SATWP +V KLA++++ + +++ I
Sbjct: 268 FVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVII 327
Query: 630 GSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKR 791
GS+ L+ANH+++QI++V E ++ +L LL++ ++Q L K++ +R
Sbjct: 328 GSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAER 381
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens]
GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 633
Score = 191 bits (465), Expect = 1e-48
Identities = 118/291 (40%), Positives = 173/291 (59%), Gaps = 16/291 (5%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQ 269
L +G++L+ AQTGSGKT A+ P I I ++R G P+A++L+PTRELA Q
Sbjct: 193 LLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252
Query: 270 IQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 449
I A +F + V+ +GG P +Q R+LERGV+I++ATPGRL D LE+ ++Q
Sbjct: 253 IHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMI 312
Query: 450 TYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWPKEVRKLAEDYLXDYV 617
+L LDEADRMLDMGFEPQIRKI++Q+ R RQTL++SAT+P+E+++LA D+L +Y+
Sbjct: 313 RFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYI 372
Query: 618 QINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKRXT 797
+ +G + S+ I+Q V+ + +K + L LL +N G + L L+ ++ KR
Sbjct: 373 FLAVGRVG-SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRG- 430
Query: 798 XPEISDDMDGQLC----ACTXTNTARKG*SXXPILKRVVSS---ILVATDV 929
+D ++ LC T + R LK S ILVATDV
Sbjct: 431 ----ADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDV 477
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 190 bits (463), Expect = 2e-48
Identities = 107/253 (42%), Positives = 159/253 (62%), Gaps = 9/253 (3%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQ 269
L G++L+ AQTGSGKT A+ P I I I R G P+A++L+PTRELA Q
Sbjct: 180 LAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQ 239
Query: 270 IQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 449
I A +F + V+ +GG P +Q R+LERGV+I++ATPGRL D LE+G +LQ
Sbjct: 240 IHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMV 299
Query: 450 TYLVLDEADRMLDMGFEPQIRKIIDQI-RPD---RQTLMWSATWPKEVRKLAEDYLXDYV 617
+L LDEADRMLDMGFEPQIRKI+ Q+ P RQT+++SAT+P+E+++LA D+L +Y+
Sbjct: 300 RFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYI 359
Query: 618 QINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKRXT 797
+ +G + S+ I+Q V+ + +K + L LL +N + G + L L+ ++ K+
Sbjct: 360 FLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKG- 417
Query: 798 XPEISDDMDGQLC 836
+D ++ LC
Sbjct: 418 ----ADSLENWLC 426
Score = 34.7 bits (76), Expect = 0.16
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 758 TIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEGR 901
T++FVETK+ A G+PA +H D+ ++ +FK GR
Sbjct: 408 TLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGR 455
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 179 bits (435), Expect = 5e-45
Identities = 98/236 (41%), Positives = 145/236 (61%), Gaps = 9/236 (3%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 281
++L+ AQTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 282 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 461
A +F + V+ +GG P +Q R+LERG +I++ATPGRL D LE+ ++Q +L
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLA 308
Query: 462 LDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWPKEVRKLAEDYLXDYVQINI 629
LDEADRMLDMGFEPQIRKI++Q+ R RQT+++SAT+P ++++LA D++ +Y+ + +
Sbjct: 309 LDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAV 368
Query: 630 GSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKRXT 797
G + S+ I Q V+ QE +K + L LL + QD + L ++ K T
Sbjct: 369 GRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADT 423
Score = 32.3 bits (70), Expect = 0.85
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 758 TIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEGR 901
T++FVETKR A +PA +H D+ ++ +FK GR
Sbjct: 411 TLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGR 458
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 179 bits (435), Expect = 5e-45
Identities = 98/236 (41%), Positives = 145/236 (61%), Gaps = 9/236 (3%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 281
++L+ AQTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 282 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 461
A +F + V+ +GG P +Q R+LERG +I++ATPGRL D LE+ ++Q +L
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLA 308
Query: 462 LDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWPKEVRKLAEDYLXDYVQINI 629
LDEADRMLDMGFEPQIRKI++Q+ R RQT+++SAT+P ++++LA D++ +Y+ + +
Sbjct: 309 LDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAV 368
Query: 630 GSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKRXT 797
G + S+ I Q V+ QE +K + L LL + QD + L ++ K T
Sbjct: 369 GRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADT 423
Score = 32.3 bits (70), Expect = 0.85
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 758 TIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEGR 901
T++FVETKR A +PA +H D+ ++ +FK GR
Sbjct: 411 TLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGR 458
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 168 bits (408), Expect = 9e-42
Identities = 97/229 (42%), Positives = 141/229 (61%), Gaps = 20/229 (8%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQV 281
Q ++++G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++
Sbjct: 349 QQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEE 408
Query: 282 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 461
+F + R T + GG EQ + +G EIVIATPGRLID LE+ L +C Y+V
Sbjct: 409 TVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVV 468
Query: 462 LDEADRMLDMGFEPQIRKIID-----QIRPD------------RQTLMWSATWPKEVRKL 590
LDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P V +L
Sbjct: 469 LDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERL 528
Query: 591 AEDYLXDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQ 737
A YL + V + IG+ + + I Q V + +E EK +L LL E+G+
Sbjct: 529 ARKYLRNPVVVTIGTAGKTTD-LISQHVIMMKESEKFFRLQKLLDELGE 576
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 157 bits (381), Expect = 2e-38
Identities = 83/204 (40%), Positives = 126/204 (61%), Gaps = 9/204 (4%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVA 284
G++++G+A TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V
Sbjct: 183 GRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVV 242
Query: 285 SEFG----NSSY--VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR 446
+F + Y +R+ GG R Q ++RGV IV+ATPGRL D L K +L
Sbjct: 243 EQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDA 302
Query: 447 CTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQIN 626
C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L V +N
Sbjct: 303 CRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVN 362
Query: 627 IGSLQLSANHNILQIVDVCQEHEK 698
+G +AN +++Q V+ ++ K
Sbjct: 363 VGRAG-AANLDVIQEVEYVKQEAK 385
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 154 bits (373), Expect = 2e-37
Identities = 84/204 (41%), Positives = 124/204 (60%), Gaps = 9/204 (4%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVA 284
G++++G+A TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V
Sbjct: 134 GRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVV 193
Query: 285 SEFGNS----SY--VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR 446
+F S Y +R+ GG R Q +++GV IV+ATPGRL D L K +L
Sbjct: 194 EQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDA 253
Query: 447 CTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQIN 626
C L LDEADR++D+GFE IR + D + RQTL++SAT P +++ A L V +N
Sbjct: 254 CRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVN 313
Query: 627 IGSLQLSANHNILQIVDVCQEHEK 698
+G +AN +++Q V+ ++ K
Sbjct: 314 VGRAG-AANLDVIQEVEYVKQEAK 336
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 144 bits (348), Expect = 2e-34
Identities = 71/175 (40%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAS 287
+G++++G A+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 140 EGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK--- 196
Query: 288 EFGNSSYVRNT-CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 464
EF S+ +T C++GG P +Q R L+ GV++ + TPGR+ID +++G NL ++VL
Sbjct: 197 EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVL 256
Query: 465 DEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINI 629
DEAD+ML +GF + I++++ RQ++M+SAT P +R L + YL + + +++
Sbjct: 257 DEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDL 311
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 141 bits (342), Expect = 9e-34
Identities = 71/175 (40%), Positives = 115/175 (65%), Gaps = 2/175 (1%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAS 287
+G++++G A+TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++
Sbjct: 152 EGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK--- 208
Query: 288 EFGNSSYVRNT-CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 464
EF S+ +T C++GG P +Q R+L G+++ + TPGR+ID +++G NL ++VL
Sbjct: 209 EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVL 268
Query: 465 DEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINI 629
DEAD+ML +GF + I+ ++ RQ++M+SAT P +R L + YL + + I++
Sbjct: 269 DEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDL 323
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 138 bits (335), Expect = 7e-33
Identities = 74/178 (41%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQ 275
QG++++ A+TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q++
Sbjct: 138 QGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVE 197
Query: 276 QVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTY 455
+ E ++ Y+ CV+GG Q L RGV++V+ TPGR+ID +E + L Y
Sbjct: 198 KEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEY 255
Query: 456 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINI 629
LVLDEAD+ML +GFE + I++ + RQ++++SAT P V+KLA YL + + I++
Sbjct: 256 LVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 125 bits (301), Expect = 9e-29
Identities = 73/201 (36%), Positives = 115/201 (57%), Gaps = 9/201 (4%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQ 278
G +LVG A+TG GKTLA++LP + + N P + G P LVL PTRELA+Q+
Sbjct: 133 GADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAA 192
Query: 279 VASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 458
+G S + + C++GG Q L+RGV+IV+ TPGR+ D +E+ + +
Sbjct: 193 DFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFR 252
Query: 459 VLDEADRMLDMGFEPQIRKIIDQIRPDR--QTLMWSATWPKEVRKLAEDYL-XDYVQIN- 626
VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++ +L D I+
Sbjct: 253 VLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDL 312
Query: 627 IGSLQLSANHNILQIVDVCQE 689
+G+ ++ A++++ I C +
Sbjct: 313 VGNDKMKASNSVRHIAIPCNK 333
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 123 bits (297), Expect = 3e-28
Identities = 73/215 (33%), Positives = 113/215 (52%), Gaps = 3/215 (1%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 147 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 464
G + V GG P Q +++GVE++I TPGR++D L K T L VL
Sbjct: 207 KMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVL 266
Query: 465 DEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQL 644
DE D ML GF Q+ +I Q Q L++SAT +EV K+ + + ++IG+
Sbjct: 267 DEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPN- 324
Query: 645 SANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDP 749
N + Q+ +K+ KL +L+ + P
Sbjct: 325 KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPP 359
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 123 bits (297), Expect = 3e-28
Identities = 73/215 (33%), Positives = 113/215 (52%), Gaps = 3/215 (1%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 10 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 69
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 464
G + V GG P Q +++GVE++I TPGR++D L K T L VL
Sbjct: 70 KMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVL 129
Query: 465 DEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQL 644
DE D ML GF Q+ +I Q Q L++SAT +EV K+ + + ++IG+
Sbjct: 130 DEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPN- 187
Query: 645 SANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDP 749
N + Q+ +K+ KL +L+ + P
Sbjct: 188 KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPP 222
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 119 bits (286), Expect = 6e-27
Identities = 66/210 (31%), Positives = 115/210 (54%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++ A+ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV E
Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKEL 222
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
G ++ GG ++ L + V +++ TPGR++D +KG L+ C+ LV+DEA
Sbjct: 223 GKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEA 282
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSAN 653
D++L F+P + +I + RQ LM+SAT+P V+ + +L + IN+ +L+
Sbjct: 283 DKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMD-ELTLK 341
Query: 654 HNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
I Q +E +K + LN L ++ NQ
Sbjct: 342 -GITQFYAFVEERQKIHCLNTLFSKLQINQ 370
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 119 bits (286), Expect = 6e-27
Identities = 66/210 (31%), Positives = 115/210 (54%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++ A+ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV E
Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKEL 222
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
G ++ GG ++ L + V +++ TPGR++D +KG L+ C+ LV+DEA
Sbjct: 223 GKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEA 282
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSAN 653
D++L F+P + +I + RQ LM+SAT+P V+ + +L + IN+ +L+
Sbjct: 283 DKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMD-ELTLK 341
Query: 654 HNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
I Q +E +K + LN L ++ NQ
Sbjct: 342 -GITQFYAFVEERQKIHCLNTLFSKLQINQ 370
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 118 bits (285), Expect = 8e-27
Identities = 70/179 (39%), Positives = 106/179 (59%), Gaps = 2/179 (1%)
Frame = +3
Query: 99 QSLCQGKNLVGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQ 275
Q L +GK+++G A+TGSGKTLA+++PA+ + + R G G I V+ PTRELA Q +
Sbjct: 121 QPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVI--VICPTRELAIQTK 178
Query: 276 QVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCT 452
VA E + V GG +R +A+ + G +VIATPGRL+D L+ + +
Sbjct: 179 NVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLK 238
Query: 453 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINI 629
LV+DEADR+L+ FE + KI+ + RQT ++SAT +V+ LA L V +++
Sbjct: 239 CLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDV 297
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 118 bits (285), Expect = 8e-27
Identities = 62/165 (37%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
+ G ++V +A+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q +
Sbjct: 62 ILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFT 118
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL-EKGTTNLQRCTYLV 461
E G + +R + + GG +Q +L +G +++IATPGRL+ L E L+ Y+V
Sbjct: 119 KELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVV 178
Query: 462 LDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAE 596
DEAD + MGF Q+ +I+ Q+ +RQTL++SAT P + + A+
Sbjct: 179 FDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 117 bits (282), Expect = 2e-26
Identities = 69/210 (32%), Positives = 113/210 (53%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G +++ A+ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV E
Sbjct: 191 GSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKEL 245
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
+ GG R+ L + V +++ TPGR++D +KG L+ C LV+DEA
Sbjct: 246 SKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEA 305
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSAN 653
D++L + F+P I ++I + RQ LM+SAT+P V+ + YL IN+ QL+
Sbjct: 306 DKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMD-QLTL- 363
Query: 654 HNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
+ Q +E +K + LN L ++ NQ
Sbjct: 364 MGVTQYYAFVEERQKVHCLNTLFSKLQINQ 393
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 116 bits (279), Expect = 4e-26
Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 1/176 (0%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
L G++++G A+TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA
Sbjct: 188 LMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVA 246
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLV 461
E V GG ++ +A L +GV +++ATPGRL+D LE + + +LV
Sbjct: 247 KELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLV 306
Query: 462 LDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINI 629
+DEADR+L+ FE ++KI++ + RQT ++SAT +V LA L V I++
Sbjct: 307 MDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDV 362
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 115 bits (277), Expect = 7e-26
Identities = 71/184 (38%), Positives = 110/184 (59%), Gaps = 9/184 (4%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQ 269
+GK+++G+AQTGSGKT A+ +P + + +++P R P A VL+PTRELA Q
Sbjct: 45 EGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ 104
Query: 270 IQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQ 443
I + G +R + GG + +Q L + +++ATPGRL D + KG + L+
Sbjct: 105 IAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFS-LK 163
Query: 444 RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQI 623
YLVLDEADR+L+ FE + +I+++I +R+T ++SAT K+VRKL L + V+I
Sbjct: 164 SLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKI 223
Query: 624 NIGS 635
S
Sbjct: 224 EAAS 227
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain;
identical to cDNA DEAD box RNA helicase, RH26 GI:3776024
Length = 850
Score = 115 bits (276), Expect = 9e-26
Identities = 84/225 (37%), Positives = 117/225 (52%), Gaps = 11/225 (4%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQIQ 275
+ QGK+++ A+TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 416 ILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAA 475
Query: 276 QVASEFGN-SSYVRNTCVFGGAP-KREQARDLERGVEIVIATPGRLIDFLEKGT---TNL 440
A+ + V GG EQ R +I++ATPGRL D +E + T L
Sbjct: 476 AEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRL 535
Query: 441 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYL-XDYV 617
LVLDEAD +LDMGF I +II + RQT ++SAT P+EVR++ L D+
Sbjct: 536 MGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHE 595
Query: 618 QINIGSLQLSANH-NILQIVDVCQEHEKENKLNVLLQE-IGQNQD 746
IN H + Q+ + + L+VLL+E I N D
Sbjct: 596 FINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVD 640
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 114 bits (275), Expect = 1e-25
Identities = 67/210 (31%), Positives = 113/210 (53%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G +++ A+ G+GKT A+ +P + I+ + + A++L PTRELA Q QV E
Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKEL 215
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
++ GG R+ L + V +++ TPGR++D +KG L+ C LV+DEA
Sbjct: 216 SKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEA 275
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSAN 653
D++L F+P + ++I + +RQ LM+SAT+P V+ + +L IN+ QL+
Sbjct: 276 DKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMD-QLTL- 333
Query: 654 HNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
+ Q +E +K + LN L ++ NQ
Sbjct: 334 MGVTQYYAFVEERQKVHCLNTLFSKLQINQ 363
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 114 bits (275), Expect = 1e-25
Identities = 67/210 (31%), Positives = 113/210 (53%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G +++ A+ G+GKT A+ +P + I+ + + A++L PTRELA Q QV E
Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKEL 215
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
++ GG R+ L + V +++ TPGR++D +KG L+ C LV+DEA
Sbjct: 216 SKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEA 275
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSAN 653
D++L F+P + ++I + +RQ LM+SAT+P V+ + +L IN+ QL+
Sbjct: 276 DKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMD-QLTL- 333
Query: 654 HNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
+ Q +E +K + LN L ++ NQ
Sbjct: 334 MGVTQYYAFVEERQKVHCLNTLFSKLQINQ 363
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 111 bits (267), Expect = 1e-24
Identities = 76/215 (35%), Positives = 122/215 (56%), Gaps = 7/215 (3%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQ 275
LC K++V A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI
Sbjct: 50 LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIH 107
Query: 276 QVASEFGNS-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEKGT-TNLQR 446
+VA F ++ V + + GG LE G ++I TPGRL D +++ + +
Sbjct: 108 KVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRN 167
Query: 447 CTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQIN 626
L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT + V LA+ L + +++
Sbjct: 168 LEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVI 227
Query: 627 IGSLQLSANHNILQIVDV-CQEHEKENKLNVLLQE 728
G+ S + L + C+ +K ++L LL E
Sbjct: 228 SGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLIE 262
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 109 bits (261), Expect = 6e-24
Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 16/235 (6%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQ 266
++ + K++V + TGSGKTLAY+LP IV + + G P +VL PTREL++
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSE 203
Query: 267 QIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR 446
Q+ +VA + + R+ V GG+ R Q L +++V+ TPGR++ +E+G
Sbjct: 204 QVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGD 263
Query: 447 CTYLVLDEADRMLDMGFEPQIRKIIDQIRP------DR--QTLMWSATWPKEVRKLAEDY 602
YLVLDEAD M D GF P+IRK + + D+ QT++ +AT V+KL ++
Sbjct: 264 IAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEE 323
Query: 603 LXDYVQINIGSLQ---LSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAR 758
+ +L +A H+ +++ E+KL LLQ + + G++
Sbjct: 324 FQGIEHLRTSTLHKKIANARHDFIKL------SGGEDKLEALLQVLEPSLAKGSK 372
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 108 bits (259), Expect = 1e-23
Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG--PI-ALVLAPTRELAQQIQ 275
+ +GK+++ A+TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 88 ILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAA 147
Query: 276 QVASEFGN-SSYVRNTCVFGGAPKR-EQARDLERGVEIVIATPGRLIDFLEKG---TTNL 440
A+ + V GG EQ R +I++ATPGRL D +E T L
Sbjct: 148 TEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRL 207
Query: 441 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 590
+ LVLDEAD +LDMGF I +II + +RQT ++SAT P+EVR++
Sbjct: 208 KGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQI 257
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 107 bits (258), Expect = 1e-23
Identities = 66/164 (40%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++G+AQTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ +
Sbjct: 95 GRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKAL 149
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN---LQRCTYLVL 464
G+ +R + + GG Q L IVI TPGR+ LE R +LVL
Sbjct: 150 GSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVL 209
Query: 465 DEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAE 596
DEADR+LD+GF+ ++R I + RQTL++SAT ++ L E
Sbjct: 210 DEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 107 bits (257), Expect = 2e-23
Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 13/224 (5%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQIQ-- 275
GK+ + A+TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 365 GKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAE 424
Query: 276 -QVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQ 443
+ +F + V+ T + G K +Q R +I+IATPGRL+D +E T+ L
Sbjct: 425 GKALLKFHDGIGVQ-TLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLM 483
Query: 444 RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYL-XDYVQ 620
++DEAD +LD+GF + KIID + RQ+L++SAT PKEVR++++ L D+
Sbjct: 484 ALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSY 543
Query: 621 INIGSLQLSANHNILQIVDVCQEHEKENKL--NVLLQEIGQNQD 746
I+ L H+ ++ + HE L ++L + I D
Sbjct: 544 IDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPD 587
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 106 bits (255), Expect = 3e-23
Identities = 67/206 (32%), Positives = 119/206 (57%), Gaps = 3/206 (1%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 281
+LC G++++G A+TGSGKTLA+++P + ++ + DG ++++PTRELA Q V
Sbjct: 105 ALC-GRDILGAARTGSGKTLAFVIPILEKLHRERWSPE-DGVGCIIISPTRELAAQTFGV 162
Query: 282 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ--RCTY 455
++ G + GG + ++ + I++ PGRL+ +++ T N + +
Sbjct: 163 LNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDE-TPNFECPQLQI 221
Query: 456 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGS 635
L+LDEADR+LD F+ Q+ II Q+ RQTL++SAT K+V+ LA L D I++ +
Sbjct: 222 LILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHA 281
Query: 636 LQLSAN-HNILQIVDVCQEHEKENKL 710
++A +++Q V + +K + L
Sbjct: 282 EAVTATPTSLMQTVMIVPVEKKLDML 307
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 106 bits (254), Expect = 4e-23
Identities = 62/172 (36%), Positives = 93/172 (54%)
Frame = +3
Query: 108 CQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAS 287
C+G +++ AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V
Sbjct: 74 CKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ-----ALVLAPTRELAQQIEKVMR 128
Query: 288 EFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 467
G+ V+ GG RE R L+ GV +V+ TPGR+ D L++ + VLD
Sbjct: 129 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLD 188
Query: 468 EADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQI 623
EAD ML GF+ QI I + P Q ++SAT P E ++ ++ V+I
Sbjct: 189 EADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI 240
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 105 bits (253), Expect = 6e-23
Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++L A TGSGKT A+ LP + + +P +R L+L PTRELA QI +
Sbjct: 204 GRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNL 261
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG-TTNLQRCTYLVLDE 470
+ ++ + GG REQ L +IV+ATPGR+ID L + +L L+LDE
Sbjct: 262 AQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 321
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAE 596
ADR+L GF +I +++ RQT+++SAT +EV++L +
Sbjct: 322 ADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 105 bits (252), Expect = 7e-23
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 10/172 (5%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQIQ 275
+ QGK+++ A+TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 114 ILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAA 173
Query: 276 QVAS---EFGNSSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGT---T 434
A+ ++ S V+ V GG + R L++ +I++ATPGRL D ++ + T
Sbjct: 174 AEANILLKYHPSIGVQ--VVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFAT 231
Query: 435 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 590
L LVLDEAD +LDMGF +I +II + RQT ++SAT EVR++
Sbjct: 232 RLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 105 bits (251), Expect = 1e-22
Identities = 72/204 (35%), Positives = 112/204 (54%), Gaps = 10/204 (4%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA----LVLAPTRELAQQIQQV 281
GK+ + A+TG+GK++A++LPAI + +G +A L+L PTRELA QI
Sbjct: 412 GKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAE 471
Query: 282 ASEF-GNSSYVRNTCVFGGAPKREQARDLE-RGVEIVIATPGRLIDFLEKG---TTNLQR 446
N + + GG R + LE +I+IATPGRL+D +E T+ L
Sbjct: 472 GKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMA 531
Query: 447 CTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYL-XDYVQI 623
++DEAD +LD+GF+ + KIID + RQ+L++SAT PKEVR++++ L D+ I
Sbjct: 532 LKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYI 591
Query: 624 NIGSLQLSANHNILQIVDVCQEHE 695
+ L H+ ++ + HE
Sbjct: 592 DTIGLGCVETHDKVKQSCIVAPHE 615
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 104 bits (250), Expect = 1e-22
Identities = 62/172 (36%), Positives = 92/172 (53%)
Frame = +3
Query: 108 CQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAS 287
C+G +++ AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V
Sbjct: 74 CKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMR 128
Query: 288 EFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 467
G+ V+ GG RE R L+ GV +V+ TPGR+ D L + + VLD
Sbjct: 129 ALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLD 188
Query: 468 EADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQI 623
EAD ML GF+ QI I + P Q ++SAT P E ++ ++ V+I
Sbjct: 189 EADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI 240
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 104 bits (249), Expect = 2e-22
Identities = 62/181 (34%), Positives = 107/181 (59%), Gaps = 6/181 (3%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQ 275
LC K++ A TGSGKTLA+++P + + PP + + ++++PTREL+ QI
Sbjct: 50 LCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIY 107
Query: 276 QVASEFGNS-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEK-GTTNLQR 446
VA F ++ + V + + GG + + +E G ++I TPGRL D +E+ + +
Sbjct: 108 NVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRN 167
Query: 447 CTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQIN 626
L+LDEADR+L+MGF+ Q+ II ++ R+T ++SAT + V +LA+ L + V++
Sbjct: 168 LEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVE 227
Query: 627 I 629
+
Sbjct: 228 V 228
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 103 bits (248), Expect = 2e-22
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 2/215 (0%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 278
+ +G++++ AQ+G+GKT +A + IV+I+++ LVL+P+RELA Q ++
Sbjct: 56 ILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEK 108
Query: 279 VASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 458
G + ++ GG E + LERGV V TPGR+ D +++G+ + L
Sbjct: 109 TIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLL 168
Query: 459 VLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSL 638
VLDE+D ML G + QI + + D Q + SAT P+E+ ++ E ++ D V+I +
Sbjct: 169 VLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPD 228
Query: 639 QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
+L+ VDV +E K + L L + NQ
Sbjct: 229 ELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQ 263
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 103 bits (247), Expect = 3e-22
Identities = 69/212 (32%), Positives = 106/212 (50%)
Frame = +3
Query: 108 CQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAS 287
C+G +++ AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V
Sbjct: 76 CKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQ-----ALVLAPTRELAQQIEKVMR 130
Query: 288 EFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 467
G+ V+ GG RE R L+ GV +V+ TPGR+ D L + + VLD
Sbjct: 131 ALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLD 190
Query: 468 EADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLS 647
EAD ML GF+ QI I + Q ++SAT P E ++ ++ V+I + +L+
Sbjct: 191 EADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 250
Query: 648 ANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
V+V +E K L L + + Q
Sbjct: 251 LEGIKQFYVNVDKEEWKLETLCDLYETLAITQ 282
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 102 bits (244), Expect = 7e-22
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 19/205 (9%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHIN-NQPPIRRGDGPIALVLAPTRELAQQIQQV 281
+ G++++ A TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ +
Sbjct: 64 ILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYET 123
Query: 282 ASEFGNS-SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR-CTY 455
+ + ++ V GG K ++ L +G+ I+IATPGRL+D L+ + + + +
Sbjct: 124 LEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRW 183
Query: 456 LVLDEADRMLDMGFEPQIRKII-------------DQIRP---DRQTLMWSATWPKEVRK 587
++ DEAD +L++G+ +I +II D I P +Q L+ SAT +V
Sbjct: 184 VIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVND 243
Query: 588 LAEDYLXDYVQINIGSLQLSANHNI 662
LA+ L D V I + + +L N +I
Sbjct: 244 LAKLSLDDPVMIGLDNTKLQQNLSI 268
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 101 bits (241), Expect = 2e-21
Identities = 56/178 (31%), Positives = 93/178 (52%)
Frame = +3
Query: 90 RXGQSLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 269
R + QG++++ AQ+G+GKT L ++ + AL+L+PTRELA Q
Sbjct: 64 RAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQ 118
Query: 270 IQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 449
++ G + ++ GG E R LE GV +V TPGR+ D +++ + +
Sbjct: 119 TEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAI 178
Query: 450 TYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQI 623
L+LDE+D ML GF+ QI + + PD Q + SAT P E+ ++ ++ + V+I
Sbjct: 179 KLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKI 236
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 94.7 bits (225), Expect = 1e-19
Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQ 275
LC K++V A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI
Sbjct: 51 LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIH 108
Query: 276 QVASEFGNSSYVRNTCVFGGAPKREQARDL----ERGVEIVIATPGRLIDFLEKGT-TNL 440
+VA VR A RE D+ E G ++I TPGRL D +++ +
Sbjct: 109 KVARA------VR----LDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDF 158
Query: 441 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAE 596
+ L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT + V LA+
Sbjct: 159 RNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 93.1 bits (221), Expect = 4e-19
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 6/216 (2%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIQQVASE 290
G +++ A++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVR 136
Query: 291 FGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPGRLIDFLEKGTTNLQRCTYL 458
F S+Y+ +T VF G + +DL + IV+ TPGR++ + +L+ +
Sbjct: 137 F--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHF 194
Query: 459 VLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGS 635
+LDE D+ML+ + +++I D+Q +M+SAT KE+R + + ++ D ++I +
Sbjct: 195 ILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD 254
Query: 636 LQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
H ++Q E EK KLN LL + NQ
Sbjct: 255 EAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQ 290
Score = 30.7 bits (66), Expect = 2.6
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +2
Query: 749 WGKTIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEG 898
+ + +IFV++ +A +P++C+H ++ + + +FKEG
Sbjct: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEG 337
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 92.7 bits (220), Expect = 6e-19
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 6/216 (2%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIQQVASE 290
G +++ A++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVR 136
Query: 291 FGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPGRLIDFLEKGTTNLQRCTYL 458
F S+Y+ +T VF G + +DL + IV+ TPGR++ + +L+ +
Sbjct: 137 F--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHF 194
Query: 459 VLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGS 635
+LDE D+ML+ + +++I D+Q +M+SAT KE+R + + ++ D ++I +
Sbjct: 195 ILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD 254
Query: 636 LQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
H ++Q E EK KLN LL + NQ
Sbjct: 255 EAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQ 290
Score = 30.7 bits (66), Expect = 2.6
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +2
Query: 749 WGKTIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEG 898
+ + +IFV++ +A +P++C+H ++ + + +FKEG
Sbjct: 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEG 337
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 90.6 bits (215), Expect = 2e-18
Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 6/209 (2%)
Frame = +3
Query: 135 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIQQVASEFGNSSYV 311
A++G GKT ++L + I P G + ALVL TRELA QI F S+Y+
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRF--STYL 58
Query: 312 RNT--CVFGGAPKREQARDLERGV--EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 479
+T VF G + +DL + IV+ TPGR++ + +L+ + +LDE D+
Sbjct: 59 PDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 118
Query: 480 MLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSANH 656
ML+ + +++I D+Q +M+SAT KE+R + + ++ D ++I + H
Sbjct: 119 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH 178
Query: 657 NILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
++Q E EK KLN LL + NQ
Sbjct: 179 GLVQHYIKLSEMEKTRKLNDLLDALDFNQ 207
Score = 30.7 bits (66), Expect = 2.6
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +2
Query: 749 WGKTIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEG 898
+ + +IFV++ +A +P++C+H ++ + + +FKEG
Sbjct: 205 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEG 254
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 89.8 bits (213), Expect = 4e-18
Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 7/168 (4%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQV 281
GK+ + Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLAN 470
Query: 282 ASEFGNSSY-VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 458
S R+ V GG +R Q +LE+GV+++IATPGR + +G L
Sbjct: 471 CRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCA 530
Query: 459 VLDEADRML-DMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV-RKLAE 596
+LDE D + D FE ++ +I+ Q L +AT P E+ KL E
Sbjct: 531 ILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVE 578
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 85.8 bits (203), Expect = 6e-17
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 18/156 (11%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLA 245
QGK+++G A+TGSGKTLA+ LP + + + DG + AL++
Sbjct: 227 QGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIIT 286
Query: 246 PTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL-- 419
PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL + +
Sbjct: 287 PTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSA 346
Query: 420 -EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 524
EK L ++ VLDEADRM++ G +++ I+D
Sbjct: 347 GEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 83.4 bits (197), Expect = 3e-16
Identities = 78/297 (26%), Positives = 133/297 (44%), Gaps = 6/297 (2%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 296
K+L+ A GSGKT ++L + ++ P +R P AL + PTRELA Q +V + G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
Query: 297 NSSYVRNTCVFGGAPKREQA--RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
+ + + + A R +VI TPG L ++ L LV DE
Sbjct: 187 KFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDE 246
Query: 471 ADRMLDM-GFEP---QIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSL 638
AD ML GF +I K I ++ P+ Q L++SAT+ + V+ + D Q+ +
Sbjct: 247 ADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKRE 306
Query: 639 QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKRXTXPEISDD 818
L+ + ++ Q VC +++NK+ V+ +I + D G + + +K K + +
Sbjct: 307 DLALD-SVKQYKVVCP--KEQNKIEVIKDQIMELGDIG-QTIIFVKTKASAQKVHKALAE 362
Query: 819 MDGQLCACTXTNTARKG*SXXPILKRVVSSILVATDVGCXRS*CGMGSNFXINFDXP 989
M + + T K ++ +L+ATDV R N +N++ P
Sbjct: 363 MGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDV-IARGFDQQRVNLVVNYNLP 418
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 78.6 bits (185), Expect = 1e-14
Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 7/182 (3%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 281
+ +GK++V A+TGSGKTLAY+LP + + + + + P A +L P+REL QQ+
Sbjct: 80 ILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTE 139
Query: 282 ASEFGNSSYVRNTCV-FGGAPKREQARDLERGV-EIVIATPGRLIDFLEKG----TTNLQ 443
S V+ V + R+ G+ EI+++TP + G T +
Sbjct: 140 VSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSE 199
Query: 444 RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQI 623
+ LVLDEAD +L G+E +R + I Q L+ SAT +V KL + L + + +
Sbjct: 200 SLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVL 259
Query: 624 NI 629
+
Sbjct: 260 TL 261
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar to
RNA helicase involved in rRNA processing GB:6321267 from
[Saccharomyces cerevisiae]c, ontains DEAD and DEAH box
domain
Length = 541
Score = 78.2 bits (184), Expect = 1e-14
Identities = 80/301 (26%), Positives = 139/301 (46%), Gaps = 6/301 (1%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
L G+ A TGSGKT A+I P ++ + DG A++L+P RELA Q +
Sbjct: 175 LLSGRECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQTAREG 230
Query: 285 SEF--GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 458
+ G++ ++R P + A + +++I+TP RL ++ +L + YL
Sbjct: 231 KKLIKGSNFHIRLMT----KPLVKTADFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYL 286
Query: 459 VLDEADRMLDMGFEPQIRKIIDQI-RPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGS 635
VLDE+D++ + QI ++ P ++SAT P V +LA + D V++ IG
Sbjct: 287 VLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGR 346
Query: 636 LQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKRXTXPEISD 815
+ +A+ + Q + +E KL L Q ++ +P L ++ KE+ E+ D
Sbjct: 347 -KNTASETVKQ--KLVFAGSEEGKLLALRQSFAESLNPPV--LIFVQSKER---AKELYD 398
Query: 816 DMDGQ-LCACTXTNTARKG*SXXPI--LKRVVSSILVATDVGCXRS*CGMGSNFXINFDX 986
++ + + A + G + + +L+ATDV R G N IN+D
Sbjct: 399 ELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDV-IARGMDFKGINCVINYDF 457
Query: 987 P 989
P
Sbjct: 458 P 458
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 76.2 bits (179), Expect = 5e-14
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 24/198 (12%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--------ALVLAPTRE 257
++ +G + V + TGSGKTLAY+LP + I R A+++AP+RE
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202
Query: 258 LAQQI-QQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGRLIDFLEKGT 431
L QI ++V G + GGA + Q L++ IV+ TPGR+ + + G
Sbjct: 203 LGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGK 262
Query: 432 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI--------------RPDRQTLMWSATW 569
+ C +LVLDE D +L F I +I++ + R +RQT++ SAT
Sbjct: 263 LHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATV 322
Query: 570 PKEVRKLAEDYLXDYVQI 623
P V + A+ + + V +
Sbjct: 323 PFSVIRAAKSWSHEPVLV 340
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 63.3 bits (147), Expect = 4e-10
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 23/165 (13%)
Frame = +3
Query: 141 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV------------A 284
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVRCLR---ALVVLPTRDLALQVKDVFDAIAPAVGLSVG 126
Query: 285 SEFGNSSYVRNTCVFGGAPKREQ---------ARDLERGVEIVIATPGRLIDFLE--KGT 431
S G SS PK + +++LE V+I++ATPGRL+D + KG
Sbjct: 127 SAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGF 186
Query: 432 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 566
T L+ YLV+DE DR+L ++ + ++ + +L S T
Sbjct: 187 T-LEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFT 230
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 60.5 bits (140), Expect = 3e-09
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 2/193 (1%)
Frame = +3
Query: 216 GDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLER-GVEIVIA 392
G+ P L L P++ A Q++ V + + GAP Q L+ E ++A
Sbjct: 194 GNSPFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVA 252
Query: 393 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 572
TP RL++ + ++ + LV+DE + G+ ++ I I QT++++ ++
Sbjct: 253 TPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFS 312
Query: 573 KEVRKLAEDYLXDYV-QINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDP 749
+ + +L V ++ + S I Q V VC EK+ LQ+ ++ D
Sbjct: 313 ASIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCASEEKK------LQKFAKHLDS 366
Query: 750 GARPLYLLKLKEK 788
+ L + KE+
Sbjct: 367 SSSKLIYIVTKEE 379
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 58.4 bits (135), Expect = 1e-08
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINN----QPPIRRGDGP-----IALVLAPTR 254
S+ GK+++ A+TGSGKT Y+ P I + N R + P I+L+L P
Sbjct: 113 SILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNV 172
Query: 255 ELAQQIQQVAS----EFGNSSY-VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 419
L +Q+ ++ + E GN V C G P +R +I+++TP L++ +
Sbjct: 173 MLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWP--------DRLPDIIVSTPAALLNNI 224
Query: 420 E-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 545
E K L+ RC Y+V DEAD +L F+ QI ++I+ +R D +
Sbjct: 225 EPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEK 270
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 56.8 bits (131), Expect = 3e-08
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 14/243 (5%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 281
+L G++ + AQTGSGKTL Y+L IN Q A+++ PTREL Q+ +V
Sbjct: 109 TLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKV 163
Query: 282 ASEFGNSSY--VRNTCVF----GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ 443
A S V+ V GG +R ++ I++AT L LEK +
Sbjct: 164 ARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRID 223
Query: 444 RCTYLVLDEADRMLDMGFE-PQIRKIIDQIR--PDRQTLMWSATWPKEVRKLAEDYLXDY 614
LV+DE D + + +RK++ RQT+ SA+ P+ + + +
Sbjct: 224 SVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKW 283
Query: 615 VQINIGSLQLSANHNILQIVDVCQEH-----EKENKLNVLLQEIGQNQDPGARPLYLLKL 779
+ ++ + +SA + + +C H EK NK VLL + ++ P + +++ +
Sbjct: 284 TKRDVVHVHVSA----IMPMPLCLLHRFVMCEKTNKHQVLLALL-ESDAPESAIIFVGEQ 338
Query: 780 KEK 788
EK
Sbjct: 339 SEK 341
>At3g58460.1 68416.m06516 rhomboid family protein /
ubiquitin-associated (UBA)/TS-N domain-containing
protein contains Pfam profiles PF01694: Rhomboid family,
PF00627: UBA/TS-N domain
Length = 403
Score = 31.5 bits (68), Expect = 1.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 895 LFKIGKXLHPFLAVFVXVHAHSWPSISSDISGNVXRFSFSFNKYNGLAPGSWF 737
LF + L+P++ + V + S+ + G + FS+S+ +N L PGS F
Sbjct: 169 LFNVPAKLYPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSF 221
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 30.3 bits (65), Expect = 3.4
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
GKN+ T SGK+L Y +P + + AL L PT+ LAQ + S+
Sbjct: 408 GKNVAVATMTSSGKSLCYNVPVF------EELCKDTNSCALYLFPTKALAQDQLRALSDL 461
Query: 294 --GNSSYVRNTCVFGGAPKREQAR 359
G + + G P +++ R
Sbjct: 462 IKGFEASINMGVYDGDTPYKDRTR 485
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 30.3 bits (65), Expect = 3.4
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 11/150 (7%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 281
++ G++++ + G GK+L Y LPA++ G LV++P L Q
Sbjct: 100 AIMTGRDVLVIMAAGGGKSLCYQLPAMLR-----------GGTTLVVSPLLSLIQDQVMG 148
Query: 282 ASEFGNSSYVRNTCVFGGAPKREQARDLERG---VEIVIATP------GRLIDFLEKGTT 434
+ G S+Y+ T G ++ + LE+G ++I+ TP R + LEK
Sbjct: 149 LAALGISAYML-TSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEK-CH 206
Query: 435 NLQRCTYLVLDEADRMLDMG--FEPQIRKI 518
N R + + +DEA G F P + +
Sbjct: 207 NAGRLSLISIDEAHCCSQWGHDFRPDYKNL 236
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 29.9 bits (64), Expect = 4.5
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
Frame = +3
Query: 330 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQ 506
GG +R ++ I++AT L LEK + LV+DE D + +
Sbjct: 29 GGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGS 88
Query: 507 IRKIIDQIR--PDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSANHNILQIVDV 680
+RK++ RQT+ SA+ P+ + + + + ++ + +SA + + +
Sbjct: 89 VRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSA----IMPMPL 144
Query: 681 CQEH-----EKENKLNVLLQEIGQNQDPGARPLYLLKLKEK 788
C H EK NK VLL + ++ P + +++ + EK
Sbjct: 145 CLLHRFVMCEKTNKHQVLLALL-ESDAPESAIIFVGEQSEK 184
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 29.5 bits (63), Expect = 6.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 615 VQINIGSLQLSANHNILQIVDVCQEHE----KENKLNVLLQEIGQNQDPGARPLYLL 773
+++N+ L +H I + +D CQ + K+ +L+ + E G+N G R L L
Sbjct: 1330 IRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAKDERLDATVVENGENWSVGQRQLVCL 1386
>At3g59140.1 68416.m06593 ABC transporter family protein putative
multi resistance protein mrp - Arabidopsis thaliana,
EMBL:ATMRPPROT
Length = 1453
Score = 29.5 bits (63), Expect = 6.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 615 VQINIGSLQLSANHNILQIVDVCQ----EHEKENKLNVLLQEIGQNQDPGARPLYLL 773
V+ N+ L ++ I +++ CQ EKEN L+ L+ E G N G R L+ L
Sbjct: 1298 VRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCL 1354
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 29.5 bits (63), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 720 LQEIGQNQDPGARPLYLLKLKEKRXTXPEISDDMDGQLC 836
LQ G + G R LL+ ++ T ++SDDM G LC
Sbjct: 415 LQTDGDRRGTGRR--LLLENGSRKSTSEDVSDDMSGSLC 451
>At2g39180.1 68415.m04812 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 776
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 961 DPIPHQDLXQPTSVATSILETTLFKIGK 878
DP+PHQ + PT+V S+ ET +F++ +
Sbjct: 486 DPVPHQSVLLPTAV--SLGETKIFRLSE 511
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,675,729
Number of Sequences: 28952
Number of extensions: 560998
Number of successful extensions: 1535
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3980738496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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