Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B07_e50_03.seq
         (1508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein si...    30   3.5  
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    30   3.5  
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (...    29   6.0  

>At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 [Nicotiana tabacum]
          Length = 501

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 275 FRRHLWRVYH*SNLDTHSWSLYTVHQRPVCVSRHQQYKRRQWCYAFSETAGNPSA 439
           F RH W ++       +  SL   + RP+  ++  +Y+ R+WC   ++ AGN +A
Sbjct: 337 FERH-WGIFSYDGAVKYPLSLG--NGRPLVPTKGVRYQAREWCVLSTQAAGNGAA 388


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 311 WTNDRPATGASEKQCVRESLMHCSRVRLLYDCF 213
           W ND P    SE+Q   E L  C  + +   CF
Sbjct: 213 WLNDNPVLQKSERQMADEILQGCPSLEIYNSCF 245


>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
           (IRX5) nearly identical to cellulose synthase
           [Arabidopsis thaliana] GI:27462651; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1049

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 78  EGRRQLTVSVAVALIACACAGPGANDLLQTKQKLSEISSKPAVEQKTVVEKSDSRAV 248
           E R+++T     + I C C G   N    + +K S I S  +  +K   +KSD + +
Sbjct: 590 EKRKKMTCDCWPSWICCCCGGGNRNHKSDSSKKKSGIKSLFSKLKKKTKKKSDDKTM 646


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,655,060
Number of Sequences: 28952
Number of extensions: 373311
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4028931456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)