SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B02_e10_04.seq
         (1509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subun...   272   5e-73
At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subun...   263   2e-70
At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subun...   263   2e-70
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta...   126   4e-29
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    41   0.002
At3g06820.1 68416.m00809 mov34 family protein similar to SP|P467...    40   0.004
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    40   0.006
At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [H...    40   0.006
At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [H...    39   0.010
At3g42980.1 68416.m04514 hypothetical protein                          32   1.1  
At5g33240.1 68418.m03931 hypothetical protein                          31   2.6  
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa...    30   4.6  
At1g35920.1 68414.m04461 hypothetical protein includes At5g34960...    29   8.0  

>At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subunit 5A
            (CSN5A) / c-JUN coactivator protein AJH2, putative (AJH2)
            COP9 complex subunit CSN5-2; identical to c-Jun
            coactivator protein AJH2 GI:3641312 from [Arabidopsis
            thaliana]; identical to cDNA CSN complex subunit 5A
            (CSN5A) GI:18056660; contains Pfam profile PF01398:
            Mov34/MPN/PAD-1 family
          Length = 358

 Score =  272 bits (666), Expect = 5e-73
 Identities = 144/270 (53%), Positives = 166/270 (61%), Gaps = 4/270 (1%)
 Frame = +2

Query: 227  SQSNIAQKTWVMANNMEIV----SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISA 394
            S S IA+KTW + N++  V    S  D+I+ YD   Q      KPWE DPH+FK +KISA
Sbjct: 4    SSSTIARKTWELENSILTVDSPDSTSDNIFYYDDTSQTRFQQEKPWENDPHYFKRVKISA 63

Query: 395  LALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTA 574
            LALLKMV+HARSGGT+E+MGL+ GK D +T+IVMD+FALPVEGTETRVNAQ  AYEYM  
Sbjct: 64   LALLKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVNAQDDAYEYMVE 123

Query: 575  YIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTXFXW 754
            Y +  K  GR EN +GWYHSHPGYGCWLSGIDVSTQ LNQ  QEPF+A+VIDP RT    
Sbjct: 124  YSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAG 183

Query: 755  KSLPWCXQNISXGYKPC**RXXXNIQTIPLXKXRNFGGXLATXXFP*SXXFKTPLXXGXT 934
            K      +  S GYKP         QTIPL K  +FG             FK+ L     
Sbjct: 184  KVEIGAFRTYSKGYKPP-DEPVSEYQTIPLNKIEDFGVHCKQYYSLDVTYFKSSLDSHLL 242

Query: 935  GXHLGXKXWXNTLXRLNLDPNPDYPTGNYS 1024
               L  K W NTL    L  N DY  G  S
Sbjct: 243  DL-LWNKYWVNTLSSSPLLGNGDYVAGQIS 271


>At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subunit 5B
            (CSN5B) / c-JUN coactivator protein AJH1, putative (AJH1)
            COP9 complex subunit CSN5-1; identical to Arabidopsis
            homologs of a c-Jun coactivator AJH1 GI:3641314 from
            [Arabidopsis thaliana]; identical to cDNA CSN complex
            subunit 5B (CSN5B) GI:18056662; contains Pfam profile
            PF01398: Mov34/MPN/PAD-1 family
          Length = 351

 Score =  263 bits (645), Expect = 2e-70
 Identities = 140/270 (51%), Positives = 166/270 (61%), Gaps = 4/270 (1%)
 Frame = +2

Query: 227  SQSNIAQKTWVMANNMEIV----SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISA 394
            S S IA+KTW + NN+  V    S  D I+ YD   Q  I   KPW  DP++FK + ISA
Sbjct: 4    SSSAIARKTWELENNILPVEPTDSASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISA 63

Query: 395  LALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTA 574
            LALLKMV+HARSGGT+E+MGL+ GK + +T+IVMD+FALPVEGTETRVNAQ+ AYEYM  
Sbjct: 64   LALLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVE 123

Query: 575  YIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTXFXW 754
            Y + +K  GR EN +GWYHSHPGYGCWLSGIDVSTQMLNQ +QEPF+A+VIDP RT    
Sbjct: 124  YSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAG 183

Query: 755  KSLPWCXQNISXGYKPC**RXXXNIQTIPLXKXRNFGGXLATXXFP*SXXFKTPLXXGXT 934
            K      +    G+K          QTIPL K  +FG             FK+ L     
Sbjct: 184  KVEIGAFRTYPEGHKIS-DDHVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLL 242

Query: 935  GXHLGXKXWXNTLXRLNLDPNPDYPTGNYS 1024
               L  K W NTL    L  N DY  G  S
Sbjct: 243  DL-LWNKYWVNTLSSSPLLGNGDYVAGQIS 271


>At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subunit 5B
            (CSN5B) / c-JUN coactivator protein AJH1, putative (AJH1)
            COP9 complex subunit CSN5-1; identical to Arabidopsis
            homologs of a c-Jun coactivator AJH1 GI:3641314 from
            [Arabidopsis thaliana]; identical to cDNA CSN complex
            subunit 5B (CSN5B) GI:18056662; contains Pfam profile
            PF01398: Mov34/MPN/PAD-1 family
          Length = 357

 Score =  263 bits (645), Expect = 2e-70
 Identities = 140/270 (51%), Positives = 166/270 (61%), Gaps = 4/270 (1%)
 Frame = +2

Query: 227  SQSNIAQKTWVMANNMEIV----SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISA 394
            S S IA+KTW + NN+  V    S  D I+ YD   Q  I   KPW  DP++FK + ISA
Sbjct: 4    SSSAIARKTWELENNILPVEPTDSASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISA 63

Query: 395  LALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTA 574
            LALLKMV+HARSGGT+E+MGL+ GK + +T+IVMD+FALPVEGTETRVNAQ+ AYEYM  
Sbjct: 64   LALLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVE 123

Query: 575  YIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTXFXW 754
            Y + +K  GR EN +GWYHSHPGYGCWLSGIDVSTQMLNQ +QEPF+A+VIDP RT    
Sbjct: 124  YSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAG 183

Query: 755  KSLPWCXQNISXGYKPC**RXXXNIQTIPLXKXRNFGGXLATXXFP*SXXFKTPLXXGXT 934
            K      +    G+K          QTIPL K  +FG             FK+ L     
Sbjct: 184  KVEIGAFRTYPEGHKIS-DDHVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLL 242

Query: 935  GXHLGXKXWXNTLXRLNLDPNPDYPTGNYS 1024
               L  K W NTL    L  N DY  G  S
Sbjct: 243  DL-LWNKYWVNTLSSSPLLGNGDYVAGQIS 271


>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
           putative similar to 26S proteasome-associated pad1
           homolog [Homo sapiens] GI:1923256, 26S proteasome,
           non-ATPase subunit [Mus musculus] GI:2505940; contains
           Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 308

 Score =  126 bits (304), Expect = 4e-29
 Identities = 58/124 (46%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
 Frame = +2

Query: 374 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 550
           + + IS+LALLKM+ H R+G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V+ +A
Sbjct: 28  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEA 85

Query: 551 QAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVID 730
             + + T  ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VA+V+D
Sbjct: 86  VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVD 145

Query: 731 PVRT 742
           P+++
Sbjct: 146 PIQS 149


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +2

Query: 386 ISALALLKMVMH---ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 556
           +  L LL +V H        +  V+G+LLG     T+ V +S+A+P E  +   +     
Sbjct: 19  VHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLD 78

Query: 557 YEYMTAYIEAAKQVGRHENAIGWYHSHP 640
           + Y  +     K++   E+ +GWY + P
Sbjct: 79  HNYHESMFHMFKRINAKEHIVGWYSTGP 106


>At3g06820.1 68416.m00809 mov34 family protein similar to SP|P46736
           C6.1A protein {Homo sapiens}; contains Pfam profile
           PF01398: Mov34/MPN/PAD-1 family
          Length = 324

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 599 GRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIV 724
           GR    IGWYHSHP      S +DV TQ + Q     F+ ++
Sbjct: 6   GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLI 47


>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
 Frame = +2

Query: 380 IKISALALLKMVMH---ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQA 550
           + +  L LL +V H        +  V+G+LLG      + V +S+A+P E  +   +   
Sbjct: 17  VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76

Query: 551 QAYEYMTAYIEAAKQVGRHENAIGWYHSHP 640
             + Y  +     K++   E+ +GWY + P
Sbjct: 77  LDHNYHESMFHMFKRINAKEHVVGWYSTGP 106


>At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [Homo
           sapiens] GI:4098124; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 271

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 617 IGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP 733
           +GW H+HP  GC++S +D+ T    Q       AIV+ P
Sbjct: 123 VGWIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAP 161


>At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [Homo
           sapiens] GI:4098124; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 507

 Score = 38.7 bits (86), Expect = 0.010
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 617 IGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP 733
           +GW H+HP   C++S IDV T    Q      VAIV+ P
Sbjct: 407 LGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAP 445


>At3g42980.1 68416.m04514 hypothetical protein
          Length = 303

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 261 WQIIWK*CPMWTIYTDMTRSNNKISLLRSHGRKIHIFSKISKSRLSHF 404
           W+I  K    W  YT MT    ++ L+ +HG KIH  + + K  +S+F
Sbjct: 18  WRIQVKVFHSWRQYTSMTGETLELVLVDAHGVKIH--ASVKKDLVSNF 63


>At5g33240.1 68418.m03931 hypothetical protein
          Length = 192

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 261 WQIIWK*CPMWTIYTDMTRSNNKISLLRSHGRKIHIFSKISKSRLSHF 404
           W++  K    W  YT+MT    K+ L+ S G KIH  + + K  +S +
Sbjct: 18  WRVQVKVLHSWCQYTNMTGETLKLVLVNSQGVKIH--ASVKKDLVSKY 63


>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 576

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 218 SADSQSNIAQKTWVMANNMEIVS-NVDDIYRYDKKQQ-QDILAAKPWEKDPHFFKDIKIS 391
           S D++++I  K  V   N+E  S ++ ++ R  KK+  Q     K WE D  F   +  S
Sbjct: 368 SRDTETDIVLKGVVRVTNLEDASEHIGEVLRRVKKEHLQRAYKIKDWEDDHDFLLQLCKS 427

Query: 392 ALALLK 409
           +  LLK
Sbjct: 428 SGKLLK 433


>At1g35920.1 68414.m04461 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 567

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 261 WQIIWK*CPMWTIYTDMTRSNNKISLLRSHGRKIHIFSKISKSRLSHF 404
           W++  K    W  YT  TR   ++ +   HG+K+H  + + K  +S F
Sbjct: 18  WRVQVKILHSWKQYTSNTRETIELVISDEHGKKMH--ATVKKELVSKF 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,951,973
Number of Sequences: 28952
Number of extensions: 434894
Number of successful extensions: 994
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4028931456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -