Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A01_e1_01.seq
         (1494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09350.1 68417.m01544 DNAJ heat shock N-terminal domain-conta...    36   0.091
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    31   2.6  
At5g67300.1 68418.m08486 myb family transcription factor contain...    30   4.5  
At5g52100.1 68418.m06467 dihydrodipicolinate reductase family pr...    30   4.5  
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    29   6.0  
At1g26240.1 68414.m03201 proline-rich extensin-like family prote...    29   7.9  

>At4g09350.1 68417.m01544 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q45552 Chaperone
           protein dnaJ {Bacillus stearothermophilus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 249

 Score = 35.5 bits (78), Expect = 0.091
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 111 IYAIIEESPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGLLG-EIVNE 287
           IYA   + P + SKP PGV +  +I  +SP EG+   +  P+ S   +   LL  E   E
Sbjct: 43  IYA--SQGPTKPSKPSPGVDT--RIHWESPDEGWIGGRSDPAKSVDEDKTNLLSDEKFAE 98

Query: 288 IQNRNFDSIYSAL 326
           +   +FDS Y  L
Sbjct: 99  LIKDSFDSHYQFL 111


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 126 EESPIRHSKPLPGVPST--VKIT-PQSPPEGYNTPKPIPSNS 242
           + SPI+  +P P  PST   K T PQSPP  ++ P P P +S
Sbjct: 615 DASPIKKRRPQPPSPSTEETKTTSPQSPPV-HSPPPPPPVHS 655


>At5g67300.1 68418.m08486 myb family transcription factor contains
           PFAM profile: myb DNA binding domain PF00249
          Length = 305

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +3

Query: 132 SPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASNE-----SMGLLGEIVNEIQN 296
           S +  S  +P +PS     P   P     P PI ++S+S++     S+ L G  V+E  N
Sbjct: 149 SDVSDSSTIPILPSVELFKPVPRPGAVVLPLPIETSSSSDDPPTSLSLSLPGADVSEESN 208

Query: 297 RNFDS 311
           R+ +S
Sbjct: 209 RSHES 213


>At5g52100.1 68418.m06467 dihydrodipicolinate reductase family
           protein weak similarity to dihydrodipicolinate reductase
           [Corynebacterium glutamicum] GI:311768; contains Pfam
           profiles PF01113: Dihydrodipicolinate reductase
           N-terminus, PF05173: Dihydrodipicolinate reductase
           C-terminus
          Length = 298

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +3

Query: 93  EESSDNIYA---IIEESPIR-HSKPLPGVPSTVKITPQSPPEGYNTPKPI 230
           E+SS ++ A   +I E  +R HS  LPG+PS+ ++   SP + Y     I
Sbjct: 218 EDSSTDVQARGQVIGEDGVRVHSMVLPGLPSSTQVYFSSPGDVYTVKHDI 267


>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 99  SSDNIYAIIEESPIRHSKPLPGVPSTVKITPQSPPE---GYNTPKPIPSNS 242
           S DN  + ++ SP   S P P  P+T    P SPP    G +   P PS S
Sbjct: 38  SCDNPCSPVQSSPPPPSPPPPSTPTTACPPPPSPPSSGGGSSYYYPPPSQS 88


>At1g26240.1 68414.m03201 proline-rich extensin-like family protein
           similar to hydroxyproline-rich glycoprotein precursor
           gi|727264|gb|AAA87902; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 478

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +3

Query: 111 IYAIIEESPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASNES 257
           +Y      P  +S P P  P  V  +P  PP  Y +P P PS S S  S
Sbjct: 426 VYKSPPPPPYVYSSPPP--PPYVYKSPSPPPYVYKSPPPPPSYSYSYSS 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,725,997
Number of Sequences: 28952
Number of extensions: 350850
Number of successful extensions: 1098
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3980738496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)