Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40887
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    28   1.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.3  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   7.5  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.9  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -1

Query: 351 VDSLFYNINNSF*KRKSKIFE*ENPLSEITVLLQYFFLCFTSSNXXXXXXXXXXXXLINF 172
           V+S+  +++ +F +R  +  E E P     +L Q F LCF +               IN 
Sbjct: 587 VESIVQSLSVAFKERNDRN-EQEIPFFFEELLKQLFTLCFANCESMNVRCLIYVSQTINE 645

Query: 171 IIKKNHF 151
           I++ NHF
Sbjct: 646 IVRVNHF 652


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 453 VVVFAGLYFRIKCLSIFGFVFKGIEFNLKFVRCDVTH 563
           VV F   +F     S F F+F  + FN  F  C   H
Sbjct: 104 VVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKH 140


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 485  YPKVQTSEYNHNANAILPYKQNKIALKTNITY 390
            YP + + E   N N++LP   + +A+  N TY
Sbjct: 2569 YPSILSQEDTMNDNSLLPTFHSMVAVVKNDTY 2600


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 355 FCRLSILQYK*LFLETKIENIRVRESTFRDHRFTSI 248
           FCRL +L Y  L     +EN+ + E+  ++   T +
Sbjct: 120 FCRLKLLDYGLLNESEMVENVSLTEAIIKNSNGTPL 155


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 595 THRDVTCGYCE*VTSHRTNFKLNSIP 518
           T  +  C YCE + +H T  K  SIP
Sbjct: 131 TSPNQVCSYCEPLPNHLTKTKSCSIP 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,279
Number of Sequences: 5004
Number of extensions: 36783
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)