Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40887
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL132863-3|CAB60570.1|  412|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical
           protein E04D5.2 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 569 IATCDVTMCLNYSILF 616
           +ATCD+ +CL Y++LF
Sbjct: 67  LATCDMLICLTYTLLF 82


>AL132863-3|CAB60570.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37H2A.5 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 458 NHNANAILPYKQNKIALKTNITYKY 384
           + N NA+   + NKIAL+  I+Y+Y
Sbjct: 5   DENPNAVTHIRNNKIALRACISYEY 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,084,389
Number of Sequences: 27780
Number of extensions: 198002
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)