Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40802
(727 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC059945-1|AAH59945.1| 149|Homo sapiens MRPL20 protein protein. 77 9e-14
BC014316-1|AAH14316.1| 149|Homo sapiens mitochondrial ribosomal... 77 9e-14
BC009515-1|AAH09515.1| 149|Homo sapiens mitochondrial ribosomal... 77 9e-14
AL391244-3|CAI22658.1| 149|Homo sapiens mitochondrial ribosomal... 77 9e-14
AB049644-1|BAB40849.1| 149|Homo sapiens mitochondrial ribosomal... 77 9e-14
AK000886-1|BAA91406.1| 148|Homo sapiens protein ( Homo sapiens ... 59 1e-08
AL731551-1|CAI40246.1| 3623|Homo sapiens cubilin (intrinsic fact... 30 7.3
AL596445-1|CAH72450.1| 3623|Homo sapiens cubilin (intrinsic fact... 30 7.3
AL365215-1|CAH73630.1| 3623|Homo sapiens cubilin (intrinsic fact... 30 7.3
AF243129-1|AAK61830.1| 3494|Homo sapiens intrinsic factor-vitami... 30 7.3
AF034611-1|AAC82612.1| 3623|Homo sapiens intrinsic factor-B12 re... 30 7.3
>BC059945-1|AAH59945.1| 149|Homo sapiens MRPL20 protein protein.
Length = 149
Score = 76.6 bits (180), Expect = 9e-14
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +3
Query: 255 WARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLW 434
W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LKK++M++LW
Sbjct: 9 WLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLW 68
Query: 435 DVRITAACEQHNI 473
RITAA ++H +
Sbjct: 69 INRITAASQEHGL 81
Score = 36.7 bits (81), Expect = 0.085
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 497 LGQSNIMLDRKSLSDLASWEPKTFEALAAVA 589
L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 90 LVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>BC014316-1|AAH14316.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 protein.
Length = 149
Score = 76.6 bits (180), Expect = 9e-14
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +3
Query: 255 WARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLW 434
W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LKK++M++LW
Sbjct: 9 WLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLW 68
Query: 435 DVRITAACEQHNI 473
RITAA ++H +
Sbjct: 69 INRITAASQEHGL 81
Score = 36.7 bits (81), Expect = 0.085
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 497 LGQSNIMLDRKSLSDLASWEPKTFEALAAVA 589
L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 90 LVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>BC009515-1|AAH09515.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 protein.
Length = 149
Score = 76.6 bits (180), Expect = 9e-14
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +3
Query: 255 WARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLW 434
W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LKK++M++LW
Sbjct: 9 WLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLW 68
Query: 435 DVRITAACEQHNI 473
RITAA ++H +
Sbjct: 69 INRITAASQEHGL 81
Score = 36.7 bits (81), Expect = 0.085
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 497 LGQSNIMLDRKSLSDLASWEPKTFEALAAVA 589
L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 90 LVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>AL391244-3|CAI22658.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 protein.
Length = 149
Score = 76.6 bits (180), Expect = 9e-14
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +3
Query: 255 WARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLW 434
W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LKK++M++LW
Sbjct: 9 WLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLW 68
Query: 435 DVRITAACEQHNI 473
RITAA ++H +
Sbjct: 69 INRITAASQEHGL 81
Score = 36.7 bits (81), Expect = 0.085
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 497 LGQSNIMLDRKSLSDLASWEPKTFEALAAVA 589
L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 90 LVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>AB049644-1|BAB40849.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 (L20mt) protein.
Length = 149
Score = 76.6 bits (180), Expect = 9e-14
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +3
Query: 255 WARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLW 434
W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LKK++M++LW
Sbjct: 9 WLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLW 68
Query: 435 DVRITAACEQHNI 473
RITAA ++H +
Sbjct: 69 INRITAASQEHGL 81
Score = 36.7 bits (81), Expect = 0.085
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 497 LGQSNIMLDRKSLSDLASWEPKTFEALAAVA 589
L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 90 LVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>AK000886-1|BAA91406.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ10024 fis, clone HEMBA1000636. ).
Length = 148
Score = 59.3 bits (137), Expect = 1e-08
Identities = 27/59 (45%), Positives = 39/59 (66%)
Frame = +3
Query: 255 WARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSL 431
W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LKK++M+++
Sbjct: 9 WLRNRVTDRYFRIQEVLKHARHFWGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTV 67
>AL731551-1|CAI40246.1| 3623|Homo sapiens cubilin (intrinsic
factor-cobalamin receptor) protein.
Length = 3623
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 323 IMSG*SKNPSLSPKFVGSTTAGPFITDKNTMTI 225
+ G S+N +L+ F GST PFI+ N +T+
Sbjct: 3222 LYDGDSENANLAGTFCGSTVPAPFISSGNFLTV 3254
>AL596445-1|CAH72450.1| 3623|Homo sapiens cubilin (intrinsic
factor-cobalamin receptor) protein.
Length = 3623
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 323 IMSG*SKNPSLSPKFVGSTTAGPFITDKNTMTI 225
+ G S+N +L+ F GST PFI+ N +T+
Sbjct: 3222 LYDGDSENANLAGTFCGSTVPAPFISSGNFLTV 3254
>AL365215-1|CAH73630.1| 3623|Homo sapiens cubilin (intrinsic
factor-cobalamin receptor) protein.
Length = 3623
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 323 IMSG*SKNPSLSPKFVGSTTAGPFITDKNTMTI 225
+ G S+N +L+ F GST PFI+ N +T+
Sbjct: 3222 LYDGDSENANLAGTFCGSTVPAPFISSGNFLTV 3254
>AF243129-1|AAK61830.1| 3494|Homo sapiens intrinsic factor-vitamin B12
receptor protein.
Length = 3494
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 323 IMSG*SKNPSLSPKFVGSTTAGPFITDKNTMTI 225
+ G S+N +L+ F GST PFI+ N +T+
Sbjct: 3093 LYDGDSENANLAGTFCGSTVPAPFISSGNFLTV 3125
>AF034611-1|AAC82612.1| 3623|Homo sapiens intrinsic factor-B12
receptor precursor protein.
Length = 3623
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 323 IMSG*SKNPSLSPKFVGSTTAGPFITDKNTMTI 225
+ G S+N +L+ F GST PFI+ N +T+
Sbjct: 3222 LYDGDSENANLAGTFCGSTVPAPFISSGNFLTV 3254
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,364,910
Number of Sequences: 237096
Number of extensions: 2005766
Number of successful extensions: 3463
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3463
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -