Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40587
         (732 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    26   1.0  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   5.6  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   5.6  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   7.4  
AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical prote...    23   9.7  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +3

Query: 474 VSTRSRTLTRDTGLLGRFHEEQQVSADFWDGFFDKTVGTGQQQMSDPVHGSRNDGQTGPL 653
           V+   RT  R+     R  + QQ+ A   D   D   G G + +   + GSR   +  P+
Sbjct: 335 VAADHRTAKRNLEKAIRASKRQQIDA-LIDTAEDNEFGGGYRVVMSTLRGSRVPQEKDPI 393

Query: 654 RSGRVQS 674
             GR+ S
Sbjct: 394 ELGRIVS 400


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 223 NQLRTLNQYCAGLSS 267
           N ++TLN+YCA L S
Sbjct: 782 NAIQTLNKYCAKLPS 796


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 573 DKTVGTGQQQMSDPVHGSRNDGQTGPLRSGRV 668
           +  +G G Q +   + GSR   +T P+  GR+
Sbjct: 375 ENELGVGYQVVLSHLRGSRVPPETDPVELGRI 406


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
 Frame = +1

Query: 157  RHQGVPASSSSTSPKHQRRRPLNQL-------RTLNQYCAGLSSPRRSHHSLDDTSGYPV 315
            R +G+P S  +   +H+RR  L +L        TL     G +   RS  S  DT    +
Sbjct: 1122 RRRGLPPSPRTVRARHERRLYLQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADTIRRRM 1181

Query: 316  I*RHYESMLRLPYTISSSQETRQ 384
              R  E + R    + S+Q  R+
Sbjct: 1182 RRREMERLRRTARRVPSNQGVRE 1204


>AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 291 RRHIRLSGYMTSLRVNASSALYHLIITRNTS 383
           R H+  SG++     +A S+++ L   RNT+
Sbjct: 25  REHLHESGFVRRQGSHAKSSVHKLCHARNTT 55


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,089
Number of Sequences: 2352
Number of extensions: 15922
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)