Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40582
         (701 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p pro...   106   3e-23
AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA...   106   3e-23
U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein ...    99   3e-21
AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p pro...    31   2.0  
AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding ...    31   2.0  
AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA...    31   2.0  
BT029040-1|ABJ16973.1|  460|Drosophila melanogaster IP03738p pro...    29   6.1  

>AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p
           protein.
          Length = 352

 Score =  106 bits (254), Expect = 3e-23
 Identities = 49/63 (77%), Positives = 55/63 (87%)
 Frame = +2

Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
           +FVHQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AADKR
Sbjct: 87  VFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKR 146

Query: 434 RGY 442
           R +
Sbjct: 147 RNF 149



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +3

Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
           VIA KV+GTVKWFNVKSGYGFI RNDT+ED
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTRED 86


>AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA
           protein.
          Length = 352

 Score =  106 bits (254), Expect = 3e-23
 Identities = 49/63 (77%), Positives = 55/63 (87%)
 Frame = +2

Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
           +FVHQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AADKR
Sbjct: 87  VFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKR 146

Query: 434 RGY 442
           R +
Sbjct: 147 RNF 149



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +3

Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
           VIA KV+GTVKWFNVKSGYGFI RNDT+ED
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTRED 86


>U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein
           protein.
          Length = 359

 Score =   99 bits (238), Expect = 3e-21
 Identities = 48/63 (76%), Positives = 54/63 (85%)
 Frame = +2

Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
           +FVHQ+AIA NNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AADKR
Sbjct: 88  VFVHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKR 146

Query: 434 RGY 442
           R +
Sbjct: 147 RNF 149



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +3

Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
           VIA KV+GTVKWFNVKSGYGFI RNDT+ED
Sbjct: 58  VIATKVTGTVKWFNVKSGYGFINRNDTRED 87


>AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p
           protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 186 GTVKWFNVKSGYGFIXRND 242
           G  KWFNV  G+GF+  ND
Sbjct: 41  GKCKWFNVAKGWGFLTPND 59


>AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding
           protein LIN-28 protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 186 GTVKWFNVKSGYGFIXRND 242
           G  KWFNV  G+GF+  ND
Sbjct: 41  GKCKWFNVAKGWGFLTPND 59


>AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA
           protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 186 GTVKWFNVKSGYGFIXRND 242
           G  KWFNV  G+GF+  ND
Sbjct: 41  GKCKWFNVAKGWGFLTPND 59


>BT029040-1|ABJ16973.1|  460|Drosophila melanogaster IP03738p
           protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 275 IARNNPRKAVRSVGDGEAVEFAVVAGE-KGFEAAGVTGPGGEPVKGSPYAAD 427
           +AR  P        DG  V  AV+A +  G   AG T   G PV G+  AAD
Sbjct: 202 VARAVPATDGNGAPDGVPVAGAVLATDGNGAPVAGATDGNGAPVAGAVPAAD 253


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,598,816
Number of Sequences: 53049
Number of extensions: 442091
Number of successful extensions: 1605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)