Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40543
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1311 - 26039741-26039930,26040185-26040316,26040528-260406... 55 5e-08
02_01_0226 + 1476529-1476585,1477207-1477297,1478247-1478362,147... 46 3e-05
02_05_0413 + 28773869-28773925,28774045-28774135,28774515-287746... 44 1e-04
10_08_1062 + 22626262-22626318,22626404-22626494,22626601-226267... 42 4e-04
06_01_0098 + 818374-818427,818537-818627,818753-818868,818962-81... 41 8e-04
01_06_1108 + 34574299-34574446,34575000-34575070,34575246-345753... 41 8e-04
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 40 0.002
05_05_0295 - 23912502-23912507,23912631-23912712,23913020-239131... 40 0.002
07_01_0842 + 6840943-6841288,6841800-6841970,6842762-6842832,684... 40 0.003
03_06_0420 + 33794045-33794192,33794831-33794901,33795093-337952... 40 0.003
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 40 0.003
02_02_0711 - 13180406-13180423,13180483-13180563,13181026-131811... 36 0.041
04_03_0922 + 20834195-20836603 28 6.2
01_06_0874 + 32646039-32646269,32646351-32646450,32647400-326474... 28 6.2
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305... 28 8.3
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 28 8.3
>08_02_1311 -
26039741-26039930,26040185-26040316,26040528-26040676,
26040807-26040893,26041338-26041420,26042008-26042137
Length = 256
Score = 55.2 bits (127), Expect = 5e-08
Identities = 42/140 (30%), Positives = 76/140 (54%), Gaps = 10/140 (7%)
Frame = +2
Query: 245 IVNGLSDSGKTLLFVRLA-YSQYRQTFTSMKENIEEYITSN--------KTLKIVDLPGQ 397
+++GLS SGKT+LF +L S ++ T TSM++N + ++ + K + +VD+PG
Sbjct: 56 VLSGLSGSGKTILFYQLRDGSTHQGTVTSMEQNNDTFVLHSELERRGKVKPVHVVDVPGH 115
Query: 398 ERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYYTQSCVIRSFRETQLP-F*YCAT 574
RL+ K ++ A GIV+V+D+ + + AEY + + ++P +C
Sbjct: 116 ARLKPK-LDEVLPQAAGIVYVVDAQDFLSTMHAAAEYLYDILTKATVVKKRVPVLIFC-- 172
Query: 575 NRTSH*QKEAKLSKDYLKKK 634
N+T K SK+++KK+
Sbjct: 173 NKT---DKVTAHSKEFIKKQ 189
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +1
Query: 508 LYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSVD 681
LY IL + P+LI CNK D+ A + IK LEKE+N +R ++ N + S D
Sbjct: 152 LYDILTKATVVKKRVPVLIFCNKTDKVTAHSKEFIKKQLEKELNKLRESR-NAISSAD 208
>02_01_0226 +
1476529-1476585,1477207-1477297,1478247-1478362,
1478834-1478893,1479000-1479065,1479847-1480047
Length = 196
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/90 (26%), Positives = 50/90 (55%)
Frame = +2
Query: 245 IVNGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 424
++ GL +GKT + RL + T ++ N+E+ N + D+ GQE+LR ++
Sbjct: 21 VMLGLDAAGKTTILYRLHMGEVLSTVPTVGFNVEKVQYKNVVFTVWDVGGQEKLR-PLWK 79
Query: 425 QHKSSAKGIVFVIDSINIQKEIRDVAEYYT 514
+ S++ +++V+DS++ ++ I E+ T
Sbjct: 80 MYLSNSDALIYVVDSLDRERIIDARQEFQT 109
>02_05_0413 +
28773869-28773925,28774045-28774135,28774515-28774630,
28775627-28775686,28775767-28775832,28776499-28776693
Length = 194
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +2
Query: 230 SSQLSIVN-GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERL 406
+S++ +V GL +GKT + +L + T ++ N+E+ N + D+ GQE+L
Sbjct: 15 TSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVMFTVWDVGGQEKL 74
Query: 407 RNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEY 508
R + + ++ G+++V+DS++ ++ + AE+
Sbjct: 75 R-PLWRHYFNNTDGLIYVVDSLDRERIGKAKAEF 107
>10_08_1062 +
22626262-22626318,22626404-22626494,22626601-22626716,
22627035-22627094,22627204-22627269,22627726-22627914
Length = 192
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/88 (25%), Positives = 48/88 (54%)
Frame = +2
Query: 245 IVNGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 424
++ GL +GKT + +L + T ++ N+E+ N + D+ GQE+LR +
Sbjct: 21 VMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLR-PLWR 79
Query: 425 QHKSSAKGIVFVIDSINIQKEIRDVAEY 508
+ ++ +++V+DS++ ++ R AE+
Sbjct: 80 HYFNNTDALIYVVDSLDRERIGRARAEF 107
>06_01_0098 +
818374-818427,818537-818627,818753-818868,818962-819087,
819175-819357
Length = 189
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/77 (25%), Positives = 43/77 (55%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL +GKT + RL + + ++ N+E+ N + D+ GQ++LR + Q+
Sbjct: 23 GLDAAGKTTILYRLHIGEVLSSIPTIGFNVEKVEYKNVAFTVWDVGGQDKLR-PLWRQYF 81
Query: 434 SSAKGIVFVIDSINIQK 484
+A +++V+DS++ ++
Sbjct: 82 RNADALIYVVDSMDRER 98
>01_06_1108 +
34574299-34574446,34575000-34575070,34575246-34575365,
34575471-34575488,34575708-34575826,34576244-34576325,
34576537-34576542
Length = 187
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/100 (21%), Positives = 53/100 (53%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL +GKT + +L + T ++ N+E N + + D+ GQ+++R + +
Sbjct: 24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWRHYF 82
Query: 434 SSAKGIVFVIDSINIQKEIRDVAEYYTQSCVIRSFRETQL 553
+ +G++FV+DS + ++ + E + ++++++ +L
Sbjct: 83 QNTQGLIFVVDSNDRERVVEARDELHRMLNELQNWKKDEL 122
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +1
Query: 490 QRCSRILYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQL 669
Q + LY IL + +LI CNK D+ A + IK LEKEIN +R ++ + +
Sbjct: 663 QVVAEYLYDILTKATVVKKRIHVLIFCNKTDKVTAHSKEFIKKQLEKEINKLRESRKD-I 721
Query: 670 QSVDPSE 690
S D ++
Sbjct: 722 SSADTTD 728
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +2
Query: 365 KTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEY 508
K + +VD+PG L+ K E +A GIVF +D+ + ++ VAEY
Sbjct: 622 KPVHVVDVPGHAGLKPKLDEVLPQAA-GIVFAVDAQDFLSTMQVVAEY 668
>05_05_0295 -
23912502-23912507,23912631-23912712,23913020-23913138,
23913480-23913599,23913927-23913997,23914525-23914672
Length = 181
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL +GKT + +L + T ++ N+E N + + D+ GQ+++R + +
Sbjct: 24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWRHYF 82
Query: 434 SSAKGIVFVIDSINIQK--EIRD 496
+ +G++FV+DS + ++ E RD
Sbjct: 83 QNTQGLIFVVDSNDRERVVEARD 105
>07_01_0842 +
6840943-6841288,6841800-6841970,6842762-6842832,
6843068-6843187,6843654-6843772,6844045-6844126,
6844254-6844259
Length = 304
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL +GKT + +L + T ++ N+E N + + D+ GQ+++R + +
Sbjct: 147 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWRHYF 205
Query: 434 SSAKGIVFVIDS 469
+ +G++FV+DS
Sbjct: 206 QNTQGLIFVVDS 217
>03_06_0420 +
33794045-33794192,33794831-33794901,33795093-33795212,
33795466-33795584,33795775-33795856,33795984-33795989
Length = 181
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL +GKT + +L + T ++ N+E N + + D+ GQ+++R + +
Sbjct: 24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWRHYF 82
Query: 434 SSAKGIVFVIDS 469
+ +G++FV+DS
Sbjct: 83 QNTQGLIFVVDS 94
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL +GKT + +L + T ++ N+E N + + D+ GQ+++R + +
Sbjct: 24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWRHYF 82
Query: 434 SSAKGIVFVIDS 469
+ +G++FV+DS
Sbjct: 83 QNTQGLIFVVDS 94
>02_02_0711 -
13180406-13180423,13180483-13180563,13181026-13181188,
13182096-13182206,13182365-13182429
Length = 145
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = +2
Query: 254 GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHK 433
GL +SGKT + +++ ++ NI+ +L I D+ GQ+ +R+ ++ +
Sbjct: 23 GLDNSGKTTIVLKINGEDTGVISPTLGFNIKTIKYHKYSLNIWDIGGQKTIRS-YWRNYF 81
Query: 434 SSAKGIVFVIDSINIQK 484
G+V+V+DS +I++
Sbjct: 82 EQTDGLVWVVDSSDIRR 98
>04_03_0922 + 20834195-20836603
Length = 802
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 159 ITLLSLIVLAVTLIFWWIFSRRY 227
++ +L +LA+ L+ WW S+RY
Sbjct: 456 LSFAALFMLAIALVIWWNKSKRY 478
>01_06_0874 +
32646039-32646269,32646351-32646450,32647400-32647461,
32647503-32647609,32647689-32647839,32647925-32648073,
32648557-32648657,32648730-32648887,32648968-32649015,
32649028-32649142,32649212-32649543
Length = 517
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +2
Query: 335 ENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKG-----IVFVIDSINIQKEIRDV 499
E +E + N L IVD G+ + FE+ + ++ ++FV+DS +I + D
Sbjct: 179 EGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDS-SIGQAAFDQ 237
Query: 500 AEYYTQSCVIRSFRETQL 553
A+ + QS + + T++
Sbjct: 238 AQAFKQSVSVGAVIVTKM 255
>05_06_0027 -
25029725-25030017,25030097-25030211,25030347-25030504,
25030582-25030682,25030846-25030994,25031089-25031239,
25031329-25031482,25032249-25032321,25032446-25032676
Length = 474
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 335 ENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKG-----IVFVIDSINIQKEIRDV 499
E +E + L IVD G+ + FE+ + A+ ++FV+D +I + D
Sbjct: 165 EGVERFRKEKSDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDG-SIGQAAFDQ 223
Query: 500 AEYYTQSCVIRSFRETQL 553
A+ + QS + + T+L
Sbjct: 224 AQAFKQSASVGAVIVTKL 241
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 555 PSNIVQQTGPAISKRKPSYQRTT*KRNKFSS 647
PS +V +GP +SKR P+ R + K ++ +S
Sbjct: 518 PSGLVGYSGPLVSKRAPTPARASPKASRTAS 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,263,439
Number of Sequences: 37544
Number of extensions: 309160
Number of successful extensions: 740
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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