Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40520
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 102 3e-23
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 50 2e-07
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 40 2e-04
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 36 0.003
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 35 0.006
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 34 0.014
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.025
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 32 0.043
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 32 0.057
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 31 0.099
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.23
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.30
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.30
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 29 0.40
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.40
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.40
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 29 0.40
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 0.70
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 0.70
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 1.2
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 2.1
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 2.1
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 2.8
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 4.9
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 4.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 6.5
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 8.6
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.6
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 102 bits (245), Expect = 3e-23
Identities = 38/44 (86%), Positives = 41/44 (93%)
Frame = +2
Query: 257 SEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 388
++ECTVAWG CNHAFHFHCISRWL TR VCPLDNREWEFQ+YGH
Sbjct: 64 AQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDNREWEFQRYGH 107
Score = 94.3 bits (224), Expect = 9e-21
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = +3
Query: 126 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASA 254
RFE+KKWNAVALW WDIVVDNCAICRNHIMDLCIECQAN SA
Sbjct: 20 RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSA 62
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 50.0 bits (114), Expect = 2e-07
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 251 SPSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNR 361
SP + C + WG C H FH HCI WL T + CP+D +
Sbjct: 40 SPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPMDRQ 79
Score = 31.9 bits (69), Expect = 0.057
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 126 RFEVKKWNAVALWAWDIVVDN-CAICRNHIMDLCIEC 233
+ ++ +++A+A W WD D+ C ICR C +C
Sbjct: 2 KVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQC 38
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 39.9 bits (89), Expect = 2e-04
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCPLDNR 361
C H HFHC+ WL+ +Q CP+ R
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRR 352
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 35.9 bits (79), Expect = 0.003
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCPL 352
C+H +H C+ +W++TR +CP+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPV 668
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 35.1 bits (77), Expect = 0.006
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCPLDNREW 367
C H FH HC+ W + CPL E+
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTEF 82
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 33.9 bits (74), Expect = 0.014
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQV-CPLDNREW 367
C H FH CI W+ T + CPL N ++
Sbjct: 223 CEHVFHTQCIDTWMTTMKASCPLCNEDY 250
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 33.1 bits (72), Expect = 0.025
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQ-VCPL 352
CNH FH CI +WL + Q CPL
Sbjct: 544 CNHFFHRECIDQWLTSSQNSCPL 566
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 32.3 bits (70), Expect = 0.043
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 224 YRMPSKSSLSPSEECTVAWGVCNHAFHFHCISRWLKTRQV--CPLDNREWEF 373
Y + S P++ C G C H FH C+ +W K+ CPL + F
Sbjct: 1562 YSVLSVERTLPNKRC----GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 31.9 bits (69), Expect = 0.057
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 385
C H F +C+ +WL+ CPL +E + G
Sbjct: 127 CGHIFGKNCLQKWLENHCTCPLCRKEVPHETVG 159
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 31.1 bits (67), Expect = 0.099
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 287 CNHAFHFHCISRWL-KTRQVCPLDNRE 364
C H FH CI++W+ R CP N E
Sbjct: 339 CKHEFHRPCIAKWIVDYRHACPTCNTE 365
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.23
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKT-RQVCPL 352
C H FH CI +WL T CPL
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPL 807
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.30
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 281 GVCNHAFHFHCISRWLK 331
G C H FH CI +W K
Sbjct: 214 GTCYHVFHLSCIRKWCK 230
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.30
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCPL 352
C H FH +CI WL+ C +
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAI 435
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 29.1 bits (62), Expect = 0.40
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 332 SSTNGKYSGNGMHDYKHPKQLCILH*G*GLICLAFDTQ-IHYVISANSTVVD 180
SS NGK SGN + + + K L L GL+ L + IHY I +S VVD
Sbjct: 134 SSANGKSSGNALEEVEIQKGL--LQIIDGLVFLHGSAKVIHYNIRPSSVVVD 183
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 29.1 bits (62), Expect = 0.40
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 287 CNH-AFHFHCISRWLKTRQVCPLDNREWEFQKYG 385
C H F + CI RW+ CP+ R + YG
Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPICKRHVDCVFYG 70
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.40
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCP 349
C H + + C+ WLK + CP
Sbjct: 100 CGHTYCYECLLNWLKESKSCP 120
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.40
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCPLDNREWE 370
C H H S W T +CP+ N + E
Sbjct: 874 CGHGAHASHASEWFSTHTICPVPNCDCE 901
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 28.3 bits (60), Expect = 0.70
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 284 VCNHAFHFHCISRWLKTRQ-VCPLDNR 361
+C H F + CI + ++TRQ CP+ R
Sbjct: 642 LCGHGFCYQCIQKRIETRQRRCPICGR 668
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 28.3 bits (60), Expect = 0.70
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCPL 352
C H F + CI+ W + CPL
Sbjct: 271 CGHIFCWSCINGWTSKKSECPL 292
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 376 KVWSLNVI*KSCILHRSLTSSEHRELTCQYL 468
+VW L + + CI R S E+ E TC L
Sbjct: 25 EVWPLVTVPRQCICLRWCISKEYHEFTCSSL 55
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 2.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCPL 352
C H + C+ WLK CP+
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPM 1128
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 287 CNHAFHFHCISRW-LKTRQVCPL 352
C+H FH CI + LK +CPL
Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPL 539
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 2.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 284 VCNHAFHFHCISRW 325
VC H FH C+ +W
Sbjct: 226 VCQHTFHCPCLQKW 239
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 363 NGSSKSMVIKCHLEELHP 416
NG+ KS ++K +E+LHP
Sbjct: 553 NGAGKSTMLKLLIEQLHP 570
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 383 HTFGTP-ILYCLVDKLVESSTNGKYSGNG 300
H G P L+ +D+ +E KY GNG
Sbjct: 752 HRIGEPEYLFTRIDESMEEEWRSKYGGNG 780
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 114 GDKKRFEVKKWNAVA 158
G+ RFEVK WN VA
Sbjct: 1538 GNAYRFEVKDWNLVA 1552
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 8.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCP 349
C+H F CI +L+ +CP
Sbjct: 44 CSHTFCSFCIRDYLREHPMCP 64
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 8.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +2
Query: 287 CNHAFHFHCISRWLKTRQVCP 349
C+H H C +++T CP
Sbjct: 290 CSHPLHQRCHEEYIRTNYRCP 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,244
Number of Sequences: 5004
Number of extensions: 48069
Number of successful extensions: 126
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -