Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40519
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       29   0.067
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.83 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 0.067
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 445 GVRAGLNFETGDSIVVNIVGFKVTQSI 365
           GV  G+NF+  D+I VN+ G  V Q I
Sbjct: 169 GVEIGINFDKYDNIQVNVSGDNVPQPI 195


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 673 YGNALAGIQIRTNSDPIVRHNKIHHGQHG 759
           Y  +LAG     ++DP+V +   HH Q+G
Sbjct: 150 YTASLAGNVAPASADPMVNYTLGHHHQNG 178


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 601 FHYAVWWGCCWTLS 560
           ++   WW  CWT++
Sbjct: 485 YYPCCWWKICWTIT 498


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 601 FHYAVWWGCCWTLS 560
           ++   WW  CWT++
Sbjct: 538 YYPCCWWKICWTIT 551


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 183 CDISDCENVGLYVTDYAQGAYQDNKSQETPLLAYGSKIL 299
           C +  C N G+   D        +K+ +  L  +GS +L
Sbjct: 166 CALQFCHNAGIVHADVKPKNILMSKNGQPKLTDFGSSVL 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,600
Number of Sequences: 438
Number of extensions: 5639
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)