Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40518
         (831 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3LG55 Cluster: Reverse transcriptase; n=4; Bilateria|R...    40   0.10 
UniRef50_A1DJW3 Cluster: Putative uncharacterized protein; n=1; ...    36   0.94 
UniRef50_Q7XDY8 Cluster: Expressed protein; n=3; Oryza sativa|Re...    36   1.6  
UniRef50_Q6CI90 Cluster: Similar to sp|P47179 Saccharomyces cere...    33   6.6  

>UniRef50_Q3LG55 Cluster: Reverse transcriptase; n=4; Bilateria|Rep:
           Reverse transcriptase - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 965

 Score = 39.5 bits (88), Expect = 0.10
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 230 HDLLGLTITVQAAPPFKPKLITVSRQKIGRVMVPIRADS--QDVLPPVKCLDTMAFQSHT 403
           H LL L I +   PP  P L+T  R    R + P R  +   D LPP + L   A  S++
Sbjct: 238 HFLLSLNIHITPEPPHTPTLVTFRRNL--RSLSPNRLSTIVSDSLPPSRKL--TALDSNS 293

Query: 404 KTSAICWITQNCLGSTCSL 460
            T+ +C    +CL   C L
Sbjct: 294 ATNTLCSTLASCLDRLCPL 312


>UniRef50_A1DJW3 Cluster: Putative uncharacterized protein; n=1;
           Neosartorya fischeri NRRL 181|Rep: Putative
           uncharacterized protein - Neosartorya fischeri (strain
           ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
           fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
          Length = 771

 Score = 36.3 bits (80), Expect = 0.94
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +3

Query: 384 WHFSRILRHPQFVGSRKTASAAPAAFYKFQS*VTFNRAVFKVL 512
           W+F+      Q +   ++AS+AP +FYKF+S  +F+ A+ + L
Sbjct: 615 WYFTECPESQQHLDELRSASSAPISFYKFESHFSFHYALLQAL 657


>UniRef50_Q7XDY8 Cluster: Expressed protein; n=3; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 252

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 510 LCLHCPTSRYVRRPSACYCIPQRVPSAPSSMTCQEI 617
           LC  CP   +  RP   +C+P R P  P  +TC  +
Sbjct: 34  LCALCPFDTFCFRPLLGFCLPSRRPGDPPPLTCDSL 69


>UniRef50_Q6CI90 Cluster: Similar to sp|P47179 Saccharomyces
           cerevisiae YJR151c; n=1; Yarrowia lipolytica|Rep:
           Similar to sp|P47179 Saccharomyces cerevisiae YJR151c -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 466

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 254 TVQAAPPFKPKLITVSRQKIGRVMVPIRADSQDVLP-PVKCLDT 382
           TV   P  K K  T+S  K+   + PI++DS D+LP PV+ ++T
Sbjct: 356 TVAGEPKIKTK--TISGYKVVETIKPIKSDSPDILPIPVETVET 397


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,091,761
Number of Sequences: 1657284
Number of extensions: 16824041
Number of successful extensions: 33860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33854
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72143915536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)