Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40517
         (540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep: Zgc:...    62   6e-09
UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit...    62   6e-09
UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep...    46   6e-04
UniRef50_A2EC85 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3; Magnoliophyt...    33   5.6  
UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit...    32   7.3  

>UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep:
           Zgc:92922 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 97

 Score = 62.5 bits (145), Expect = 6e-09
 Identities = 28/42 (66%), Positives = 30/42 (71%)
 Frame = +2

Query: 254 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 379
           MWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 56  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 97


>UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit
           beta; n=31; Eukaryota|Rep: Protein transport protein
           Sec61 subunit beta - Homo sapiens (Human)
          Length = 96

 Score = 62.5 bits (145), Expect = 6e-09
 Identities = 28/42 (66%), Positives = 30/42 (71%)
 Frame = +2

Query: 254 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 379
           MWRFYT+DS            MSLLFIASVFMLHIWGKYTR+
Sbjct: 55  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep:
           SJCHGC05179 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 88

 Score = 46.0 bits (104), Expect = 6e-04
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +2

Query: 263 FYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 379
           FY++DS            MSL FI SVF+LH WGKYTR+
Sbjct: 49  FYSEDSPGIKVGPVPVLVMSLCFIVSVFLLHFWGKYTRS 87


>UniRef50_A2EC85 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 848

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 140 G*STPRSYRGSTRRLRHFYSNVVKLYFKSDIH 45
           G S P  Y+  TR   H+Y ++ K+YF  DIH
Sbjct: 442 GESYPNRYKPGTRHDDHYYVSIDKIYFFPDIH 473


>UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3;
           Magnoliophyta|Rep: Os01g0565900 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 80

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 254 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 376
           M +FYTD++            MS+ FIA V +LH++GK  R
Sbjct: 37  MLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit
           beta; n=13; Magnoliophyta|Rep: Protein transport protein
           Sec61 subunit beta - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 82

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 254 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 367
           M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 40  MLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 428,468,831
Number of Sequences: 1657284
Number of extensions: 7087717
Number of successful extensions: 14330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14322
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)