Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40514
         (744 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0YKL2 Cluster: Regulatory protein, LuxR:Autoinducer-bi...    33   7.4  

>UniRef50_Q0YKL2 Cluster: Regulatory protein,
           LuxR:Autoinducer-binding; n=1; Geobacter sp. FRC-32|Rep:
           Regulatory protein, LuxR:Autoinducer-binding - Geobacter
           sp. FRC-32
          Length = 248

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = -1

Query: 573 CIT*RNTIFQIDLIHKAVTAMNHVLLKTVAGNLSIFFYLVKLSTAHRFLFSNNHFPPYNL 394
           CI+ R+ +F ++LIH+ VT  N   +K +  +LS    +         + +N     Y++
Sbjct: 6   CISKRDAVFLLELIHECVTCKNKTGIKNIVDSLSSLVAIDNAVFGIAQIGTNGLIQTYDV 65

Query: 393 VSIAH 379
           ++I++
Sbjct: 66  MNISY 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,342,199
Number of Sequences: 1657284
Number of extensions: 12481379
Number of successful extensions: 22698
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22695
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)