Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40509
(649 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 174 2e-42
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 172 5e-42
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 155 7e-37
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 147 2e-34
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 120 4e-26
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 116 7e-25
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 107 2e-22
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 107 3e-22
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 105 1e-21
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 67 1e-18
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 77 2e-18
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 90 5e-17
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 79 1e-13
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 69 1e-10
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 62 9e-09
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 62 1e-08
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 62 1e-08
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 60 3e-08
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 60 5e-08
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 58 2e-07
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 54 2e-06
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 53 5e-06
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 53 7e-06
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 51 2e-05
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 51 3e-05
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 49 8e-05
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 49 8e-05
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 48 3e-04
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 44 0.003
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 40 0.069
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 39 0.12
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 39 0.12
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 38 0.16
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 38 0.28
UniRef50_Q7UIR9 Cluster: ATP-dependent DNA helicase; n=2; Planct... 33 4.5
UniRef50_A5BYS2 Cluster: Putative uncharacterized protein; n=3; ... 33 4.5
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 174 bits (423), Expect = 2e-42
Identities = 81/164 (49%), Positives = 106/164 (64%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR* 182
G S K I+IDGRGHLLGRLA+VIAK +L G KVVVVRCE + + +K+K +++LR
Sbjct: 3 GLSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYLRK 62
Query: 183 EVQRDSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 362
+ F F+ P+ + RGM+PHKT+RG NAL+RL+ Y+G P PFD
Sbjct: 63 RCNVNPARGPFHFRAPSRMLWKAVRGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKRLCV 122
Query: 363 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
CL+P R +C VGR++HE+GWKYRDVV LE KRK K+
Sbjct: 123 PTAMRQLCLRPDRKFCDVGRVAHEVGWKYRDVVNNLEAKRKIKS 166
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 172 bits (419), Expect = 5e-42
Identities = 82/173 (47%), Positives = 110/173 (63%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR* 182
G +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+ +K+K +++LR
Sbjct: 3 GLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRK 62
Query: 183 EVQRDSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 362
+ F F+ P+ + RGMIPHKT+RG+ AL RLR +DG P P+D
Sbjct: 63 RCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVV 122
Query: 363 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKRN 521
L+ R YC VGRLSHE+GW Y+DV++ LE KRK K RV +K N
Sbjct: 123 PIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKL--RVTLKHN 173
Score = 37.9 bits (84), Expect = 0.21
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 509 YEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 604
+ ++LK++T A E ++KA PF II+SYGY
Sbjct: 172 HNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 155 bits (377), Expect = 7e-37
Identities = 77/170 (45%), Positives = 104/170 (61%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQR 194
K +V+D RGHLLGRLAA +AK LL G +VV VR E+INI L +KLK +FL+ +
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 195 DSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 374
+ F F++P RGMIPHKT RG AL RL+ ++G PPP+D
Sbjct: 64 NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123
Query: 375 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKRNL 524
LKPGR +C +GRL+ E+GW++ D+V +LE+KRK K+ A K+ L
Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTL 173
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 147 bits (356), Expect = 2e-34
Identities = 75/188 (39%), Positives = 107/188 (56%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR* 182
G S + IV+D R H+LGRL++++AK LL G +VVVVRCE+I + L+ K+K + FLR
Sbjct: 6 GISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLRK 65
Query: 183 EVQRDSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 362
+ F+ P+ RGMIPHKT+RG AL RL+ Y+G PPP+D
Sbjct: 66 RMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPPPYDKIKRMVI 125
Query: 363 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKRNLRGSPRM 542
L+ G YC +G+LS E+GW + D +++LEDKRK +A ++ L R+
Sbjct: 126 PDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELEDKRKERAQVTYERRKQL-AKLRV 184
Query: 543 LVRRCRRR 566
R RR
Sbjct: 185 KAERLPRR 192
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 120 bits (288), Expect = 4e-26
Identities = 61/161 (37%), Positives = 90/161 (55%)
Frame = +3
Query: 12 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQ 191
+K +VID +GHLLGRLA+ +AK LL G ++VVVR E INI L +++K FL +
Sbjct: 75 DKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMN 134
Query: 192 RDSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 371
+ F+ P+ RGM+PHKT +G AL RL+ ++G P P+D
Sbjct: 135 HNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDA 194
Query: 372 XXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
L+ R C +G LS +GW + ++ KLE+KR+ +A
Sbjct: 195 LKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARA 235
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 116 bits (278), Expect = 7e-25
Identities = 60/154 (38%), Positives = 83/154 (53%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
IVID +GH+LGRL+A++AK LL G++V +VRCE+ I K + + +
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNH 63
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 380
F F+ P RGMIP+KT RG +A+ RLR YDG PP
Sbjct: 64 LRGPFHFRAPAEIVRRTIRGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKRVVCPSAMAY 123
Query: 381 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKR 482
CL+P R C VGR++HEIGW++ V + E +R
Sbjct: 124 LCLRPERRRCEVGRVAHEIGWQHAADVERYEKRR 157
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 107 bits (257), Expect = 2e-22
Identities = 62/170 (36%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
IVID + H+LGR AAV+AK LL G K+ VVRCEQ+NI + +K+K + +LR +
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNP 84
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPP-PFDNXXXXXXXXXXX 377
F + P+ + R M+P T+RG AL L Y+G PP
Sbjct: 85 TKGPFHHRAPSDVFVRTVRSMLPRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQR 144
Query: 378 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKRNLR 527
C + R Y +G + +GWKY DVV LE R KA + + LR
Sbjct: 145 HVCYRSERPYTVLGNMCKHVGWKYSDVVANLEKARVEKASRHHEKQAKLR 194
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 107 bits (256), Expect = 3e-22
Identities = 56/169 (33%), Positives = 90/169 (53%)
Frame = +3
Query: 12 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQ 191
+K IVID +GHL GRLA++++K LL+G VVVVR E I + ++ ++ + +
Sbjct: 2 DKVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMN 61
Query: 192 RDSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 371
+ + + +P+ + RGM+PHKT RG A R + Y+G P P+D
Sbjct: 62 TNPKKGPYHYTSPSRLFWKTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVKRAVVPEA 121
Query: 372 XXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKR 518
L G +C +G +IGWK+ +V++LE KR+ A + A K+
Sbjct: 122 LKVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELEAKRQTAASEYWAQKK 170
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 105 bits (251), Expect = 1e-21
Identities = 61/166 (36%), Positives = 85/166 (51%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
IVID +GH+ GRLAA +AK LL+G KVVVVRCE+I + Q FL +
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNP 64
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 380
F + P RGMIP+KT RG +A L+ Y+G P + +
Sbjct: 65 RDGPFHQRAPHEIFARAVRGMIPYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRC 124
Query: 381 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKR 518
+ R +GRLS +GWKY +VV +LE++RK ++ K K+
Sbjct: 125 VSIHTDRPTTKLGRLSTTMGWKYGNVVAQLEEQRKAESAKYFEAKK 170
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 66.9 bits (156), Expect(2) = 1e-18
Identities = 38/88 (43%), Positives = 54/88 (61%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQR 194
+ +V+ GRGHLLG LAA +AK +L G KVVVV E INI +KLK ++FL ++
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNT 63
Query: 195 DSCSWTFQFKTPT*NSMEDCRGMIPHKT 278
+ ++F+ P+ RGM+PHKT
Sbjct: 64 NPSRGPYRFQAPSRIFWWTARGMLPHKT 91
Score = 49.2 bits (112), Expect(2) = 1e-18
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +3
Query: 387 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKRNL 524
LKP R + ++GRL+H++GWKY+ V LE+ RK KA K+ L
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQL 143
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 76.6 bits (180), Expect(2) = 2e-18
Identities = 34/82 (41%), Positives = 46/82 (56%)
Frame = +3
Query: 219 FKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPG 398
F++P RGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG
Sbjct: 52 FRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPG 111
Query: 399 RNYCHVGRLSHEIGWKYRDVVR 464
YC +G+LS E+GW Y D +R
Sbjct: 112 HKYCLLGQLSKEVGWNYYDTIR 133
Score = 38.3 bits (85), Expect(2) = 2e-18
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVV 104
+V+D R H+L RLA++IAK LL G +VV
Sbjct: 12 VVVDARHHMLSRLASIIAKELLNGKRVV 39
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 89.8 bits (213), Expect = 5e-17
Identities = 49/168 (29%), Positives = 88/168 (52%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQR 194
K V+D + HLLGR+A++ AK +L+G+K++++R E +I +L + K S + +
Sbjct: 2 KIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNT 61
Query: 195 DSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 374
+ F FK+P+ + + MIPHKT RG AL+ L+ ++G P F
Sbjct: 62 NPRRGPFHFKSPSKILYQTIKRMIPHKTMRGSKALKNLKIFEGLPRIFSKIKKEKFFEAF 121
Query: 375 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKR 518
+K R ++G++ +GWK R + + D+ A+ +V +K+
Sbjct: 122 RYKVIKNYRKTVNLGKVCEVLGWKNRKFIEQKSDQL--AALGKVVLKK 167
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 78.6 bits (185), Expect = 1e-13
Identities = 50/168 (29%), Positives = 78/168 (46%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
++ID G + G+LAA +AK+LLEG +V VV E+ + L K +L +
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNP 66
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 380
F F+ P + + R MI +K RGK A+ RL TY+G P +
Sbjct: 67 RRGPFHFREPRMHLAKIIRRMISYKKPRGKAAMSRLATYEGIPRELEGQPRYKVTCAFVK 126
Query: 381 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKRNL 524
+ P R Y +G+L GWK+ + + L D+ K + K++L
Sbjct: 127 YTGNPNR-YVTLGKLLSMFGWKHAEAAKSLTDELKERESLASLQKKDL 173
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 68.9 bits (161), Expect = 1e-10
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = +3
Query: 384 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKRNLR 527
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR+ K + R ++
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMK 51
Score = 44.4 bits (100), Expect = 0.002
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +2
Query: 515 KKLKRITKDAGEKVSKATTPFTTIIQSYGYN 607
+K+KR+TK A +K+ K P+T +I+SYGYN
Sbjct: 48 RKMKRLTKKASKKIEKQVAPYTAVIKSYGYN 78
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 62.5 bits (145), Expect = 9e-09
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILW--QLL*DKLKLMSFLR*EVQRD 197
+I+ G +LGRLA+ +AK+LLEG +VV+V E+ I +++ K K + LR +
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLR--TLTN 60
Query: 198 SCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 377
F K RGM+P KT+RG+ A RRL+ Y G P F +
Sbjct: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV 120
Query: 378 XFCLKPGRNYCHVGRLSHEIGWKY 449
+P Y VG ++ +G K+
Sbjct: 121 SRLSRP--KYVTVGEVAKFLGGKF 142
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 62.1 bits (144), Expect = 1e-08
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQ- 191
+AIVIDG GH+ GRLA+V+AK LL+G++VVVV E+I I + K + +L+ V+
Sbjct: 6 EAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGK---PKRVVEKYLKRWVEW 62
Query: 192 ----RDSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDN 344
KTP RGM+P + G+++L+RL Y G P + N
Sbjct: 63 KTYYNPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGRDSLKRLTVYVGLPDEYRN 117
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 61.7 bits (143), Expect = 1e-08
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR* 182
G + IV+DG G ++GRLA+V+AK+LL G +V VV E+I L D ++ R
Sbjct: 5 GGEAREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKI----VLSGDPRMVVESYRT 60
Query: 183 EVQRDSCSWTFQF-----KTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 347
V ++ ++ +TP RGM+P RG+ AL RLR Y G P D
Sbjct: 61 TVLGVKSHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVP---DEL 117
Query: 348 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 446
+ +Y +G ++ ++GWK
Sbjct: 118 KGREFVRFPEADASRLSSHYIELGAVARQLGWK 150
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 60.5 bits (140), Expect = 3e-08
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDSC 203
VID GH+LGRL++ IAK LL G ++VVV E+ I DK + + + R S
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITG----DKYMVFERYKEKYDRGSK 73
Query: 204 SWTFQF-KTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCP 329
F + P RGM+P K+ RG++A RRLR + G P
Sbjct: 74 EKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 60.1 bits (139), Expect = 5e-08
Identities = 40/140 (28%), Positives = 61/140 (43%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDSC 203
++D H+ GRLA+ +AK+LLEGN+V ++ CE++ I + + FL+
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPE 60
Query: 204 SWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXF 383
+ + P RGM+P K GK A RLR Y G P +
Sbjct: 61 HGPYHPRRPDTIMTRMIRGMLPRKKPSGKAAHSRLRAYIGSPGHLKSFEKRKLKGAE--- 117
Query: 384 CLKPGRNYCHVGRLSHEIGW 443
+P NY + L +GW
Sbjct: 118 ITRPTANYTTMADLGETVGW 137
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 58.0 bits (134), Expect = 2e-07
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQR-DS 200
VID +LGRLA+V+AK +L+G ++ V+ E+ I + K + + ++QR D
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGKKNTIKEEWLQ----KIQRGDP 72
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 380
F + P RGM+P KT+RG+ A +RLR Y G P +
Sbjct: 73 KKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEAD 132
Query: 381 FCLKPGRNYCHVGRLSHEIGWK 446
Y +G LS E+G++
Sbjct: 133 MSRLGHLWYVTLGELSEELGYQ 154
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 54.4 bits (125), Expect = 2e-06
Identities = 28/74 (37%), Positives = 43/74 (58%)
Frame = +3
Query: 9 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EV 188
+NK VID GH+LGR+A+V+AK LL G K+V+VRCE + + L ++ + R V
Sbjct: 8 NNKVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRV 67
Query: 189 QRDSCSWTFQFKTP 230
+ F ++P
Sbjct: 68 NTNPTRGAFHHRSP 81
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 53.2 bits (122), Expect = 5e-06
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 2/144 (1%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
VID +G +LGRLA+ +AK LL G+ KV ++ E+ I + + R R +
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS----RAATLREYRETRDRGA 58
Query: 201 CSWTFQF-KTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 377
+ F K P RGM+P+K RG++A+ RL+ Y G P++
Sbjct: 59 TEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADA 116
Query: 378 XFCLKPGRNYCHVGRLSHEIGWKY 449
L Y +G +S ++G K+
Sbjct: 117 DMRLLSSNKYVELGEVSQKMGSKF 140
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 52.8 bits (121), Expect = 7e-06
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Frame = +3
Query: 9 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EV 188
+++ IV+D H+ GRL++ +AK+L +G++V +V CE+I + FL
Sbjct: 10 TDRPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINS 69
Query: 189 QRDSCSWTFQFKTPT*NSMEDCRGMIPH-KTERGKNALRRLRTYDGCPPPFDNXXXXXXX 365
+ ++ P + R M+P+ + GK +++RLR Y G P +
Sbjct: 70 IINPKHGPVHYRRPDTIITKMIRQMLPYDRKPSGKESIKRLRAYIGSPKELKSLEKIQFE 129
Query: 366 XXXXXFCLKPGRNYCHVGRLSHEIGW 443
K NY +G L IGW
Sbjct: 130 KAKIK---KSPSNYTTMGELCRVIGW 152
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 51.2 bits (117), Expect = 2e-05
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLE--GNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQR 194
+++D GH+ GRLA IAK LLE ++VVV E++ I D+ ++ + + ++
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITG----DEKMVIEWFKRKISE 74
Query: 195 DSCSWTFQFKTPT*NSMED------CRGMIPHKTERGKNALRRLRTYDGCP 329
+ + P D RGM+P K+E G++AL+RLR Y P
Sbjct: 75 WRTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 50.8 bits (116), Expect = 3e-05
Identities = 33/103 (32%), Positives = 52/103 (50%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
+V+D R +LGR+++ +A+ +L+G V VV E+ I ++ M + S
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITG----NEEATMETYHTRAELGS 65
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCP 329
S + K P RGM+P+KTE G+ AL +R Y G P
Sbjct: 66 DSGPYYPKRPDRIFKRAIRGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 49.2 bits (112), Expect = 8e-05
Identities = 31/103 (30%), Positives = 50/103 (48%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
++ D G +LGRLA+++A+ L G +V +V E+ I + +L+ + D
Sbjct: 7 LIYDAEGLVLGRLASIVARNLKRGYRVKIVNAEKAIITGD---PNMVKKEWLQKVKRGDY 63
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCP 329
F K P RGM+P KT RG+ L+ ++ Y G P
Sbjct: 64 YKGPFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVP 106
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 49.2 bits (112), Expect = 8e-05
Identities = 30/103 (29%), Positives = 52/103 (50%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
+++D R ++GR+A+ +A+ L+G V VV E+ I + + +++ V +
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGR----EEQIVEKYEKRVDIGN 65
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCP 329
+ F K P RGM+PHK +RG+ A +R Y G P
Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +3
Query: 282 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 434
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 44.0 bits (99), Expect = 0.003
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQ--LL*DKLKLMSFLR*EV 188
+ ++I+ G +LGR+A+ + ++L EG KV++V E+ I + + + KL+ ++ +
Sbjct: 8 QVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVK-TL 66
Query: 189 QRDSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFD 341
+ + ++P RGM+P K+ +G+ L+ ++ Y G P F+
Sbjct: 67 FNPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFE 116
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 39.5 bits (88), Expect = 0.069
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQI 125
K IVIDGR L+GRLA+ I +L +G + V+RC+ +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDL 39
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 38.7 bits (86), Expect = 0.12
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +3
Query: 45 LLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR 179
+LGRLA+++AK L + +VRCE+I I L K+K M FLR
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLR 45
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 38.7 bits (86), Expect = 0.12
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILW--QLL*DKLKLMSFLR*EVQR 194
+++D +LGR++ IAK+L G KV VV E+ I + + L+ ++ +Q
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVK-TMQN 66
Query: 195 DSCSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCP 329
+ + P RGM+P K + GK R L+ Y G P
Sbjct: 67 PYRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIP 110
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 38.3 bits (85), Expect = 0.16
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 426 SHEIGWKYRDVVRKLEDKRKGKAVKRVAMKRNLRGSPRMLVRRCRRR 566
+HE+GW+Y+ +V KLE+KRK K K+ R + + + +
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVKGTAYYTKKKAEMKLKRQAIEKAKAK 47
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 37.5 bits (83), Expect = 0.28
Identities = 27/108 (25%), Positives = 42/108 (38%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINILWQLL*DKLKLMSFLR*EVQRDS 200
I ID H+ GRL++ +AK LL G + +V ++ I + + + F
Sbjct: 2 IYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITGR---KEFIIDKFNNLRNTGSI 58
Query: 201 CSWTFQFKTPT*NSMEDCRGMIPHKTERGKNALRRLRTYDGCPPPFDN 344
+ KT M+P K G AL+R Y P +N
Sbjct: 59 RKGPYYPKTADRILKRSIGDMLPKKKTHGMEALKRCMVYANVPKSLEN 106
>UniRef50_Q7UIR9 Cluster: ATP-dependent DNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent DNA helicase -
Rhodopirellula baltica
Length = 787
Score = 33.5 bits (73), Expect = 4.5
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +3
Query: 438 GWKYRDVVRKLEDKRKGKAVKRVAMKRNLRGSPRM------LVRRCRRRQHHSLPSSNP 596
GW+ D+ L+ ++ AVK V +++N R +P + L+R RRR+ +L + NP
Sbjct: 251 GWRGADLNNILDFEKDYPAVKTVRLEQNYRSTPEILRVADQLIRHNRRRKQKNLFTDNP 309
>UniRef50_A5BYS2 Cluster: Putative uncharacterized protein; n=3;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 258
Score = 33.5 bits (73), Expect = 4.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 399 RNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAMKR--NLRGSPRMLVRRC 557
R CH ++S +G+KYR+ +R + + A R KR L S R++ RC
Sbjct: 7 RAXCHSIKISPSVGYKYREALRTISQVKTWSAKFRRCTKRAAKLLRSKRLVPHRC 61
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,950,050
Number of Sequences: 1657284
Number of extensions: 13219412
Number of successful extensions: 34022
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 32953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33981
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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