Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40500
         (883 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7PYP7 Cluster: Chromosome chr12 scaffold_38, whole gen...    38   0.26 
UniRef50_A7Q5N9 Cluster: Chromosome undetermined scaffold_53, wh...    37   0.78 
UniRef50_A0RXR2 Cluster: Putative uncharacterized protein; n=1; ...    35   3.2  
UniRef50_Q4RSB4 Cluster: Chromosome 13 SCAF15000, whole genome s...    33   7.3  

>UniRef50_A7PYP7 Cluster: Chromosome chr12 scaffold_38, whole genome
            shotgun sequence; n=6; Vitis vinifera|Rep: Chromosome
            chr12 scaffold_38, whole genome shotgun sequence - Vitis
            vinifera (Grape)
          Length = 1078

 Score = 38.3 bits (85), Expect = 0.26
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = +1

Query: 229  KGLLHG*--YKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQFIS 375
            K LLH    ++SLT+++  ++ + LDC  LQ  +SL+K ++ DC KLQF++
Sbjct: 982  KWLLHNATCFQSLTIKDLPNL-MSLDCLELQLLTSLEKLEICDCPKLQFLT 1031


>UniRef50_A7Q5N9 Cluster: Chromosome undetermined scaffold_53, whole
            genome shotgun sequence; n=5; core eudicotyledons|Rep:
            Chromosome undetermined scaffold_53, whole genome shotgun
            sequence - Vitis vinifera (Grape)
          Length = 1100

 Score = 36.7 bits (81), Expect = 0.78
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +1

Query: 310  LQKASSLQKFKVKDCDK--LQFISLSNNSPVQTPP---EVTIENVKEVVSLPRKFFRSPT 474
            L +A S+QK  +K+CD+  L+ +SLS+   +  PP    + IEN   + S P  FF    
Sbjct: 802  LPEAPSIQKLNLKECDEVVLRSVSLSSLPEMGLPPMLETLRIENCDSLTSFPLAFFTKLK 861

Query: 475  TANEVQC 495
            T +   C
Sbjct: 862  TLHIWNC 868


>UniRef50_A0RXR2 Cluster: Putative uncharacterized protein; n=1;
           Cenarchaeum symbiosum|Rep: Putative uncharacterized
           protein - Cenarchaeum symbiosum
          Length = 423

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 24/76 (31%), Positives = 39/76 (51%)
 Frame = +3

Query: 522 RVVDSYIKSINTRAIYNVTGASSVEFVNVTIGEIQNQGIEAILGNEDTLFSFANNKIESL 701
           R+ D Y++ +   ++YNV G   +      IGEI N+      GN+D LF+F    +E L
Sbjct: 273 RIADFYVRGLVEASVYNV-GVIELSGKQTIIGEIINE------GNQDALFAFVT--VEPL 323

Query: 702 RYKGVAVQCTSAFFTE 749
              G +++ T+ F  E
Sbjct: 324 --NGSSIRPTTQFIDE 337


>UniRef50_Q4RSB4 Cluster: Chromosome 13 SCAF15000, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 13 SCAF15000, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 812

 Score = 33.5 bits (73), Expect = 7.3
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 283 VKVVLDCPILQKA--SSLQKFKVKDCDKLQFISLSNNSPVQTPPEV-TIENVKEVVSLPR 453
           +KV+ D  ++Q      L K KV+DC   +   + N+ P  T PE+   E  +EV   P 
Sbjct: 192 MKVMTDAALVQAEPIKRLDKLKVEDCGPQESNHVENHRPQLTEPEIQNNERNREVARDPA 251

Query: 454 KFFRSPTTANE 486
               SPTT  E
Sbjct: 252 AAV-SPTTTEE 261


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 812,961,385
Number of Sequences: 1657284
Number of extensions: 16046647
Number of successful extensions: 42556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42544
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79112361923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)