Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40493
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 38 0.001
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 29 0.79
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 29 0.79
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28... 27 2.4
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 27 2.4
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 27 3.2
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 3.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.6
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = +3
Query: 513 RLKSQEKKVDYFERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIE 656
RL+ K++D+ ERA R E IPL ++ +++ D+ + ++EK+R E
Sbjct: 674 RLRVIGKRIDHLERAYRREAIPLWEEDAKQQAEHDREIFYEREKQRKE 721
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 531 KKVDYFERAKRLEEIPLLQKSLEEKQVQDK 620
KKV +FER K I L+KSL+++ + D+
Sbjct: 64 KKVRFFERKKAERRIKQLEKSLKDETMDDE 93
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 29.1 bits (62), Expect = 0.79
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 555 AKRLEEIPLLQKSLEEKQVQDKAFWE-QQEKERIEQLIEARALDVATSERMSRMAVHRDD 731
A+ L + +L K ++++ ++ A E Q+EKER EQ+ + D+ATS + + D
Sbjct: 154 ARILAQNEILLKR-QKQEAREAAIREHQKEKERREQVEQQIIFDLATSGKDPNKIIQLSD 212
Query: 732 SWRDFARNVGA 764
S + N+ +
Sbjct: 213 SLKKQQENIAS 223
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 567 EEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEAR-ALDVATSERMSRMA 716
E P Q EK ++K E+QE+E+ E+ I+ A +A ERM++M+
Sbjct: 386 ESEPEDQDEPSEKDDENKDVEEEQEQEQEEEQIDPEEAKRIALRERMAKMS 436
>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
L28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 27.5 bits (58), Expect = 2.4
Identities = 8/34 (23%), Positives = 18/34 (52%)
Frame = +1
Query: 556 PSDWKRYHFCRRAWKRNRFKTRRSGSNRKKNELN 657
P W+++ RAW+ + ++ + N KN+ +
Sbjct: 40 PDMWEKHEVINRAWRIHEYRQEKQRENLLKNQFS 73
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 513 RLKSQEKKVDYFERAKRLEEIPL-LQKSLEEKQVQDKAFWEQQEKERIEQLI 665
R K K +Y + + E +KSLE+ + + + F E EKE EQ I
Sbjct: 35 RKKLLNNKNEYLRQLSEINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAI 86
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 618 KAFWEQQEKERIEQLIEARALDVATSERMS-RMAVHRDDSWRDF 746
K W +++ +++L+E + ++S R+ +H D WRD+
Sbjct: 256 KCKWTIEDEAELKKLVEKHGTSWSLIGKLSNRLPMHCRDHWRDY 299
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/85 (21%), Positives = 46/85 (54%)
Frame = +3
Query: 486 DEGTSRASARLKSQEKKVDYFERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLI 665
D +++A+ +++ Q +K E+A+ + E Q+ L+ ++ + + E+Q R +Q +
Sbjct: 15 DSQSAQAAVQIE-QLRKAQIREKAREITEERNRQRKLQRERELRQKYEEEQ---RRQQAM 70
Query: 666 EARALDVATSERMSRMAVHRDDSWR 740
EA+ + +T + R + +++ R
Sbjct: 71 EAKRIAASTRQTSERPPLSAEEAKR 95
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 5.6
Identities = 27/93 (29%), Positives = 44/93 (47%)
Frame = -1
Query: 814 SRLESFSLKAATFLSVGAPTFRAKSRHESSRWTAMRDMRSDVATSKARASMSCSIRSFSC 635
S + S S +++F S T + S SS +++ S +S +S S S SFS
Sbjct: 305 STISSSSSSSSSFSS----TLSSSSMSSSSSFSSSPTSSSSTISS---SSSSPSSSSFSS 357
Query: 634 CSQNALS*TCFSSRLFCRSGISSNRLARSK*ST 536
+ ++ S + FSS + S SS+ L S S+
Sbjct: 358 TTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSS 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,958
Number of Sequences: 5004
Number of extensions: 32032
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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