Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40489
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   2.4  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    26   7.2  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   9.5  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 305 CTKYRHDESLCLKILHPHCVLKCDQF 382
           C K     SL +K++HP  +L C QF
Sbjct: 160 CKKVLDKPSLSIKLIHPQWLLDCLQF 185


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 374 HISVHNVGAIFSNKGFRHADILCKI 300
           H S+ N GAIF N   R+ D+L ++
Sbjct: 17  HKSMLNTGAIFKNCKLRNGDVLQEV 41


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 238 RYHCCSDEHTIAEIMYRFSDHILHKISA*RKPLFENIAPT 357
           RY  C+D   +    YRFS  + H+  A  K +    APT
Sbjct: 336 RYFNCNDR--LRSFYYRFSSWLFHQTLACAKEVESERAPT 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,756
Number of Sequences: 5004
Number of extensions: 59732
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)