Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40486
         (767 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    46   8e-04
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    41   0.039
UniRef50_A5K7D4 Cluster: Putative uncharacterized protein; n=1; ...    34   4.5  
UniRef50_Q1N4A0 Cluster: Fibronectin type III domain protein; n=...    33   7.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 46.4 bits (105), Expect = 8e-04
 Identities = 22/27 (81%), Positives = 22/27 (81%), Gaps = 2/27 (7%)
 Frame = -3

Query: 633 FCL--FLLLRWVDELTVLPVLSGYWSP 559
           FCL  FLLLRWVDELT   VLSGYWSP
Sbjct: 149 FCLSRFLLLRWVDELTAHLVLSGYWSP 175



 Score = 42.7 bits (96), Expect = 0.010
 Identities = 23/42 (54%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 338 PLSFSPNLLSGSRFRSGGRFCEALLLLGQC*QN-IRFEPREL 216
           P+ F       SRFRS GRFCEALLLLG    N +R  P EL
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYEL 115


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.7 bits (91), Expect = 0.039
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = -1

Query: 407 SQEVLTPVNIYVSSTSKLTHRHSPLSFSPNLLSGSRFRSGGRF 279
           + +VL  +     ST    HR  PLSFSP+LLSGSRFR+G  +
Sbjct: 374 AHQVLASLKTTGHSTEN-EHRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_A5K7D4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 313

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 473 KPKRIFCFTAEIGGVVVPTRA-DSQEVLTPVNIYVSSTSKLTHRHSPLSFSPNL 315
           KPK  FC  A++  V + T+A + +E +    +YV  +SK+     P SF  N+
Sbjct: 11  KPKFCFCVVADLEKVAIKTKASEHKEKICDYYVYVYHSSKMKAPTFPKSFPSNI 64


>UniRef50_Q1N4A0 Cluster: Fibronectin type III domain protein; n=1;
           Oceanobacter sp. RED65|Rep: Fibronectin type III domain
           protein - Oceanobacter sp. RED65
          Length = 891

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = -1

Query: 413 ADSQEVLTPVNIYVSSTSKLTHRHSPLSFSPNLLSGS 303
           +DS E   PV+I V S  ++    +P SFSP LLSGS
Sbjct: 24  SDSNE---PVSISVRSLERVATEETPYSFSPTLLSGS 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,594,281
Number of Sequences: 1657284
Number of extensions: 14586055
Number of successful extensions: 27612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27611
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)