Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40484
         (725 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000065CAE5 Cluster: myosin IXA; n=1; Takifugu rubrip...    34   4.1  
UniRef50_UPI00006CAF16 Cluster: hypothetical protein TTHERM_0068...    33   7.2  
UniRef50_Q7VIK2 Cluster: Type IV prepilin peptidase HopD; n=1; H...    33   9.5  

>UniRef50_UPI000065CAE5 Cluster: myosin IXA; n=1; Takifugu
            rubripes|Rep: myosin IXA - Takifugu rubripes
          Length = 2415

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 315  TTIQSTTEPVNVFISYDLNHLRSQCIFVSIFY-KLNIIRYTSPFCF 181
            TT+  T +P N+F S + +HL   C   S F+  L+ + +  PF F
Sbjct: 1494 TTVGQTDKPGNIFFSPNQSHLCKMCFLNSYFHISLHPVHFAPPFRF 1539


>UniRef50_UPI00006CAF16 Cluster: hypothetical protein TTHERM_00684640;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00684640 - Tetrahymena thermophila SB210
          Length = 1498

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 324  FIETTIQSTTEPVNVFISYDLNHLRSQCI--FVSIFYK 217
            F E  ++S  E + VF  Y+LN L+ QC+  F   F+K
Sbjct: 1406 FNEKYVESIQESIKVFTQYELNELKEQCLKQFAKQFWK 1443


>UniRef50_Q7VIK2 Cluster: Type IV prepilin peptidase HopD; n=1;
           Helicobacter hepaticus|Rep: Type IV prepilin peptidase
           HopD - Helicobacter hepaticus
          Length = 215

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -3

Query: 288 VNVFISYDLNHLRS--QCIFVSIFYKLNIIRYTSPFCF 181
           +N FIS  L  + +    IF++IFY++N+ +   PFCF
Sbjct: 157 LNAFISVFLGSVAALVYAIFLAIFYRVNLAQLKLPFCF 194


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,175,826
Number of Sequences: 1657284
Number of extensions: 13298319
Number of successful extensions: 24199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24198
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)