Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40481
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82... 30 1.7
04_04_1692 + 35395409-35395535,35395632-35395849,35397302-35398489 29 3.1
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 29 4.0
01_06_0672 + 31084791-31084844,31085081-31085194,31086645-310867... 29 4.0
01_03_0065 + 12167808-12169148 29 4.0
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801... 29 5.3
02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005... 29 5.3
03_06_0705 + 35647838-35647850,35647966-35648105,35648439-356488... 28 7.1
11_06_0255 + 21723913-21725304 28 9.3
07_03_0571 - 19602755-19603831 28 9.3
>02_01_0110 +
819022-819264,819996-820761,820846-820920,821276-821445,
821644-821742,821835-822134,822211-822318,822443-822514,
822580-822666,822887-822958,823063-823152,823795-823902,
824015-824083,824177-824242,824395-824418
Length = 782
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 398 WPEADWATECVSRAEILRLIYQGRFLHS 481
WPE D E + E +R +Y+GRFL S
Sbjct: 695 WPEVDALMEEMKNIEEVRDVYKGRFLRS 722
>04_04_1692 + 35395409-35395535,35395632-35395849,35397302-35398489
Length = 510
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 751 RIAASRQKSFGWWYLSVRTQRTRSTAS 671
R +ASR F WWY S+ T T S A+
Sbjct: 168 RESASRSSLFNWWYFSMATGITVSIAT 194
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = +3
Query: 324 PERRKSSSSVPSTRPATSHCTSTIIGPKLTGQRNACLAPRSCD*STRVASCTAQ*LWALS 503
PE+R V +PA S C S IIG G R PR+ + +SC A L +
Sbjct: 80 PEKRPRYQDVDEEQPAASEC-SEIIG----GAR-----PRAAEVEVSESSCLASVLESYL 129
Query: 504 ACP 512
ACP
Sbjct: 130 ACP 132
>01_06_0672 +
31084791-31084844,31085081-31085194,31086645-31086775,
31086911-31086979,31087532-31087603,31087727-31087799,
31087901-31087947,31088468-31088534
Length = 208
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 625 KNSCVQKKNSCDYGNY*RCYEFFESVRR 708
KN C+ ++SC GN C F+ V+R
Sbjct: 130 KNECMSFRDSCGQGNVEGCMRSFQKVKR 157
>01_03_0065 + 12167808-12169148
Length = 446
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 201 VRSFLWINRVQQTLDHRKEADTQCRQKIYPEIRSTY 308
+R FL V +T DHR T +++ PE+R Y
Sbjct: 76 LRDFLSRGLVNETADHRMRRYTDMIRRLEPEVRECY 111
>04_04_1639 +
34978498-34978585,34979049-34979343,34980070-34980107,
34980655-34980788,34980868-34980973,34981451-34981536,
34981962-34982150,34982477-34982641,34982898-34982921,
34983235-34983348,34983605-34983850
Length = 494
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 213 LWINRVQQTLDHRKEADTQCRQKIYPEIRSTY 308
+W N++Q TL+ +K+ D RQK + Y
Sbjct: 380 MWTNQMQDTLNSKKKGDNAFRQKDFSSAIDCY 411
>02_05_0085 -
25697860-25698142,25698631-25698946,25700481-25700518,
25700955-25701036,25701815-25702016
Length = 306
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -2
Query: 545 RGTRCMTVVRPRAGRERPESLSCAG-----SDPGRSVAGSRRETRIPLPSQLRAN 396
RG R VVR R+GR R S+ CA S G S ++ PL S + AN
Sbjct: 35 RGVRAAPVVRLRSGRARGVSVVCAAQGQETSFQGHSDLSQQQMNFFPLISLVAAN 89
>03_06_0705 +
35647838-35647850,35647966-35648105,35648439-35648824,
35648930-35649110,35649498-35649590,35649667-35649806,
35649906-35650005
Length = 350
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 641 KKKTAVITEITSGATSSLSPYGEVPPPKRFLP 736
++KT+V +E S A P PPP+R +P
Sbjct: 5 EEKTSVKSEEASSAAEEQPPQAAAPPPRRGVP 36
>11_06_0255 + 21723913-21725304
Length = 463
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 356 VDSAGDI-ALHVYDNWPEADWATECVS 433
+ S GD+ +LH + NWP W T +S
Sbjct: 437 LQSLGDVESLHAWRNWPSPIWITPSLS 463
>07_03_0571 - 19602755-19603831
Length = 358
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -3
Query: 379 CDVAGR-VDGTEDELFRLS 326
CD+ G VD TEDELFRL+
Sbjct: 234 CDINGVCVDATEDELFRLT 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,857,405
Number of Sequences: 37544
Number of extensions: 371124
Number of successful extensions: 1113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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