Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40477
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0497 + 3946179-3946322,3947274-3947342,3948733-3948829,395... 42 6e-04
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435... 39 0.003
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 36 0.023
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742... 30 1.5
04_04_0660 - 27017692-27017928,27018101-27018250,27018337-270184... 30 2.0
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 29 4.6
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 28 6.0
>12_01_0497 +
3946179-3946322,3947274-3947342,3948733-3948829,
3951827-3952033,3952149-3952264,3953189-3953293,
3953380-3953552,3953647-3953737,3953869-3954018,
3954482-3954724
Length = 464
Score = 41.5 bits (93), Expect = 6e-04
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = +3
Query: 18 LMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFLKKAYENLKMTAG 197
+M EEIFGP+L I + DK I ++ LI + TK AL +F KD L++ YE ++AG
Sbjct: 320 IMKEEIFGPLLPI-ITVDK-IHESFALINSMTK-ALAAYLFTKDSK-LQEQYE-AAISAG 374
Query: 198 NFYINDKSTGSVVGQQPFG 254
+ND + PFG
Sbjct: 375 GMLVNDTAVHLTNQYLPFG 393
>11_01_0550 +
4355857-4356051,4357287-4357355,4357429-4357561,
4358248-4358454,4358601-4358716,4358814-4358918,
4359008-4359180,4359273-4359363,4359682-4359831,
4359928-4360173
Length = 494
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/79 (36%), Positives = 41/79 (51%)
Frame = +3
Query: 18 LMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFLKKAYENLKMTAG 197
LM EEIFGP+L I V DK I+ ++ I + TK L +F KD+ ++ N + AG
Sbjct: 349 LMAEEIFGPLLPI-VTVDK-IEDSIQFINSRTK-PLAAYLFTKDKKLQEEFVSN--VPAG 403
Query: 198 NFYINDKSTGSVVGQQPFG 254
+ND + PFG
Sbjct: 404 GMLVNDVALHLANPHLPFG 422
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 36.3 bits (80), Expect = 0.023
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +3
Query: 15 KLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFLKKAYENLKMTA 194
K+M EE FGP+L I +N D+ + + +K+ L A+F+ +Q K L
Sbjct: 405 KIMQEEAFGPILPIMKFNS---DEEVVKLANDSKYGLGCAVFSGNQKRAIKIASQLH--C 459
Query: 195 GNFYINDKSTGSVVGQQPFG 254
G IND ++ + PFG
Sbjct: 460 GVAAINDFASSYMCQSLPFG 479
>08_02_0717 +
20372728-20372836,20372936-20373078,20374131-20374211,
20374307-20374510,20374789-20374796,20375153-20375245,
20375377-20375500,20375585-20375650,20375841-20375907,
20376600-20376676,20377032-20377145,20377546-20377623,
20377705-20377856,20377960-20378020,20378292-20378398,
20378497-20378562,20379099-20379177,20379671-20379967
Length = 641
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/70 (25%), Positives = 39/70 (55%)
Frame = +3
Query: 3 DPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFLKKAYENL 182
D ++ EE+FGPVL + ++ + ++ ++L T + L GA+ + D+ ++ E
Sbjct: 405 DTSMQIWREEVFGPVLCVKEFSTE--EEAIEL-ANDTHYGLAGAVLSGDRERCQRLTE-- 459
Query: 183 KMTAGNFYIN 212
++ AG ++N
Sbjct: 460 EIDAGIIWVN 469
>04_04_0660 -
27017692-27017928,27018101-27018250,27018337-27018427,
27018512-27018672,27018783-27019015,27019119-27019325,
27021411-27021507,27021636-27021677,27021802-27022056
Length = 490
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +3
Query: 18 LMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFLKKAYENLKMTAG 197
+MTEEIFGP+L I K I+ ++ + + L F K+ ++ E + ++G
Sbjct: 348 IMTEEIFGPLLPIITV--KKIEDSIAFVRARPR-PLAVYAFTKNAALRRRIVE--ETSSG 402
Query: 198 NFYINDKSTGSVVGQQPFG 254
+ ND + PFG
Sbjct: 403 SVTFNDAVVQYGIDSLPFG 421
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +3
Query: 6 PHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFLKKAYENLK 185
P ++ EE+FGPVL YV +++ + ++ I S L+ +IF K + K
Sbjct: 414 PSAPVVREELFGPVL--YVMKVQNLKEAVE-INNSVPQGLSSSIFTKRPDIIFKWIGPHG 470
Query: 186 MTAGNFYINDKSTGSVVG 239
G +N + G+ +G
Sbjct: 471 SDCGIVNVNIPTNGAEIG 488
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +3
Query: 42 PVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFLKKAYENLKMTAGNFYINDKS 221
P+L +Y+DKD+D+ L+ F ++ Q K Y + + D
Sbjct: 629 PLLIRRIYSDKDVDRIAKLLYPKGAFGFECSLERATQELRK--YNDFAIHQLLVSYGDSG 686
Query: 222 T-GSVVGQQPFGVAVCQVLMTRQVVPTMS*GG 314
T G++ + G A CQ L +++P+++ G
Sbjct: 687 TKGALTDEHVLGSAKCQAL--AELLPSLANDG 716
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,292,872
Number of Sequences: 37544
Number of extensions: 238587
Number of successful extensions: 390
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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