Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40475
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 163 2e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 163 2e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 163 2e-41
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 92 6e-20
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 88 1e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 65 1e-11
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 46 7e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 41 1e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.016
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.066
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.15
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.27
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.47
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.4
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.9
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.6
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 25 7.6
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 163 bits (397), Expect = 2e-41
Identities = 75/84 (89%), Positives = 78/84 (92%)
Frame = +2
Query: 2 KFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIK 181
KFEKEA E+GKGSFKYAWVLDKLKAERE GITIDIALWKFET KY VT+IDAPGHRDFIK
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIK 100
Query: 182 NMITGTSQADCAVLIVAAGTGEFE 253
NMITGTSQADCAVLI+ GTGEFE
Sbjct: 101 NMITGTSQADCAVLIIGGGTGEFE 124
Score = 136 bits (329), Expect = 3e-33
Identities = 74/143 (51%), Positives = 97/143 (67%), Gaps = 1/143 (0%)
Frame = +1
Query: 253 SGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 432
+GISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+N
Sbjct: 125 AGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFN 182
Query: 433 PAAVAFVPISGWHGDNMLEPSTKMPCSRDGRWSVKKAKLTENASLKLSMPSCHLPA-PLT 609
P V FVP+SG+ GDNM+EP+T MP + G KA + + +L ++ S PA P
Sbjct: 183 PKTVPFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPTD 241
Query: 610 SPCVFPCKTYTKSVVLVPLPVGR 678
P P + K + +PVGR
Sbjct: 242 KPLRLPLQDVYKIGGIGTVPVGR 264
Score = 88.2 bits (209), Expect = 1e-18
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = +3
Query: 510 FKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTV 665
++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTV
Sbjct: 209 YQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTV 260
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 163 bits (396), Expect = 2e-41
Identities = 74/84 (88%), Positives = 78/84 (92%)
Frame = +2
Query: 2 KFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIK 181
KFEKEA E+GKGSFKYAWVLDKLKAERE GITIDIALWKFET KY VT+IDAPGHRDFIK
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIK 100
Query: 182 NMITGTSQADCAVLIVAAGTGEFE 253
NMITGTSQADCA+LI+ GTGEFE
Sbjct: 101 NMITGTSQADCAILIIGGGTGEFE 124
Score = 136 bits (329), Expect = 3e-33
Identities = 74/143 (51%), Positives = 97/143 (67%), Gaps = 1/143 (0%)
Frame = +1
Query: 253 SGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 432
+GISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+N
Sbjct: 125 AGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFN 182
Query: 433 PAAVAFVPISGWHGDNMLEPSTKMPCSRDGRWSVKKAKLTENASLKLSMPSCHLPA-PLT 609
P V FVP+SG+ GDNM+EP+T MP + G KA + + +L ++ S PA P
Sbjct: 183 PKTVPFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPTD 241
Query: 610 SPCVFPCKTYTKSVVLVPLPVGR 678
P P + K + +PVGR
Sbjct: 242 KPLRLPLQDVYKIGGIGTVPVGR 264
Score = 88.2 bits (209), Expect = 1e-18
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = +3
Query: 510 FKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTV 665
++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTV
Sbjct: 209 YQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTV 260
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 163 bits (396), Expect = 2e-41
Identities = 74/84 (88%), Positives = 78/84 (92%)
Frame = +2
Query: 2 KFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIK 181
KFEKEA E+GKGSFKYAWVLDKLKAERE GITIDIALWKFET KY VT+IDAPGHRDFIK
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIK 100
Query: 182 NMITGTSQADCAVLIVAAGTGEFE 253
NMITGTSQADCA+LI+ GTGEFE
Sbjct: 101 NMITGTSQADCAILIIGGGTGEFE 124
Score = 136 bits (329), Expect = 3e-33
Identities = 74/143 (51%), Positives = 97/143 (67%), Gaps = 1/143 (0%)
Frame = +1
Query: 253 SGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 432
+GISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+N
Sbjct: 125 AGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFN 182
Query: 433 PAAVAFVPISGWHGDNMLEPSTKMPCSRDGRWSVKKAKLTENASLKLSMPSCHLPA-PLT 609
P V FVP+SG+ GDNM+EP+T MP + G KA + + +L ++ S PA P
Sbjct: 183 PKTVPFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPTD 241
Query: 610 SPCVFPCKTYTKSVVLVPLPVGR 678
P P + K + +PVGR
Sbjct: 242 KPLRLPLQDVYKIGGIGTVPVGR 264
Score = 88.2 bits (209), Expect = 1e-18
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = +3
Query: 510 FKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTV 665
++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTV
Sbjct: 209 YQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTV 260
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 92.3 bits (219), Expect = 6e-20
Identities = 44/84 (52%), Positives = 52/84 (61%)
Frame = +2
Query: 2 KFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIK 181
K EA GKGSF YAW+LD + ER G+T+D+A FE+ K I DAPGHRDFI
Sbjct: 211 KLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFIS 270
Query: 182 NMITGTSQADCAVLIVAAGTGEFE 253
MI G S AD AVL+V + FE
Sbjct: 271 GMIAGASSADFAVLVVDSSQNNFE 294
Score = 72.9 bits (171), Expect = 4e-14
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYN 432
G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+
Sbjct: 296 GFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFK 353
Query: 433 PAAVAFVPISGWHGDNMLE 489
+ V FVPIS G N+++
Sbjct: 354 TSNVHFVPISAISGTNLIQ 372
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 552 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVARR 674
G L+ ALD ++PP +P KPLRL + DVY+ TV R
Sbjct: 384 GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTVTGR 424
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 87.8 bits (208), Expect = 1e-18
Identities = 39/84 (46%), Positives = 55/84 (65%)
Frame = +2
Query: 2 KFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIK 181
K E+EA+E GK S+ +W LD ERE G T+++ FET +++DAPGH+ ++
Sbjct: 272 KIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVT 331
Query: 182 NMITGTSQADCAVLIVAAGTGEFE 253
NMI G SQAD VL+++A GEFE
Sbjct: 332 NMINGASQADIGVLVISARRGEFE 355
Score = 69.3 bits (162), Expect = 5e-13
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 SCRYR*IRSGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 408
S R +G + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S
Sbjct: 348 SARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSM 407
Query: 409 YIKKI-GYNPAA-VAFVPISGWHGDNMLEPSTKMPC 510
+++++ GYN V ++P+S + G N+ + C
Sbjct: 408 FLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVC 443
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 64.9 bits (151), Expect = 1e-11
Identities = 30/75 (40%), Positives = 47/75 (62%)
Frame = +2
Query: 23 EMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 202
++G+ SF +DK E+ GITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 203 QADCAVLIVAAGTGE 247
D A+++V+A G+
Sbjct: 139 TMDGAIIVVSATDGQ 153
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +1
Query: 274 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 411
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
Score = 34.3 bits (75), Expect = 0.016
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 561 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTV 665
L+EA+D+ + P R TD P + ++DV+ I G GTV
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTV 269
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +2
Query: 56 VLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 235
V+D L AER+ GITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 236 GTG 244
G
Sbjct: 127 SAG 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +2
Query: 59 LDKLKAERELGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 226
LDKL+ ER GIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 227 VAAGTG 244
V A G
Sbjct: 155 VDASQG 160
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 34.3 bits (75), Expect = 0.016
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 29 GKGSFKYAWVLDKLKAERELGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 202
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 203 QADCAVLIVAAGTG 244
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.066
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 119 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 244
FE S Y + IID PGH DF + D AVL++ A +G
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSG 181
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.15
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 137 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 232
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 134 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 244
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 146 IIDAPGHRDFIKNMITGTSQADCAVLIV 229
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 62 DKLKAER-ELGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 184
+K++A+ E + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 134 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 229
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 134 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 229
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 68 LKAERELGIT---IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 229
L+ ER + I + +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 184 LERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 123 SNFQRAISIVIPSSRSAFSLSNTQAYLKDPLPISWAS 13
S F IS+ +P+ FSL+ ++ K LPI W S
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCS 439
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -3
Query: 586 RMASRASMRHFPSALPSLRSTCHPLNKAFWLKAPTCCLRAIQKW 455
R SR+S R S PS+ ST P N++F K C A +KW
Sbjct: 1336 RHLSRSSSR--ASKKPSIVSTTGPFNESFSAKPVEPC--ASEKW 1375
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 365 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 454
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 530 LHLPSLEQGILVEGSNMLSPCHPEMG 453
+H +QG+LV + P HPE+G
Sbjct: 11 IHQALFQQGVLVAKKDFNLPKHPEVG 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,737
Number of Sequences: 5004
Number of extensions: 66627
Number of successful extensions: 238
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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