Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40460
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0646 + 4742398-4742994,4743681-4744085                           31   0.58 
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530...    29   3.1  
08_02_0440 + 17192122-17192691,17193947-17194912                       27   9.4  
06_02_0025 + 10719385-10719424,10719885-10720063                       27   9.4  
03_01_0517 - 3874834-3875196                                           27   9.4  
02_02_0428 + 10127620-10127662,10128618-10128717,10128773-10129808     27   9.4  

>03_01_0646 + 4742398-4742994,4743681-4744085
          Length = 333

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 486 SKWRDRCQRFSIHGSFAEIQKNLSNKAIGGCSSRS 590
           +K + RC RF IH   AE+++  +  A G C+SRS
Sbjct: 198 AKEKQRCHRFLIHRIRAEVER-ATPSAAGACASRS 231


>12_02_0726 -
           22552005-22552035,22552507-22552598,22552970-22553094,
           22553221-22553311,22553475-22553755,22554211-22554394,
           22554499-22554583,22554692-22554782,22554909-22555293,
           22555457-22555669,22555873-22556418,22556572-22556788,
           22556907-22557058,22557519-22557663,22557846-22557907,
           22559130-22559291,22559393-22559482,22560055-22560215,
           22560907-22560997,22561125-22561308,22561556-22561737,
           22561857-22562086,22562622-22562685
          Length = 1287

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 483 NSKWRDRCQRFSIHGSFAEIQKNLSNKAI 569
           N+K R+RC +F +HG  AE   +  +K +
Sbjct: 153 NTKKRERCCKFDLHGPDAEFWDDFDSKMV 181


>08_02_0440 + 17192122-17192691,17193947-17194912
          Length = 511

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 474 LCSNSKWRDRCQRF 515
           LC N KWR+ CQ F
Sbjct: 439 LCDNKKWREACQFF 452


>06_02_0025 + 10719385-10719424,10719885-10720063
          Length = 72

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 67  NLIRSYDRDLN*TKGFIELCVC*KSYIHRLE**IRWINRSGVRFGVQQW 213
           NLIR   R L+  K  I L    + ++H L     WINRSG    +  W
Sbjct: 26  NLIRKQQRRLHSDK--IRLQRQPRQHVHALSVQYEWINRSGTLMMILWW 72


>03_01_0517 - 3874834-3875196
          Length = 120

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 444 NHRLITAAKQLCSNSKWRDRCQRFSIHGSFAEIQKNLSNKAI 569
           N+RL+  A+     SK + +C  + + GS A   K LS KAI
Sbjct: 79  NYRLVILAETTPGGSKAKFQCVVWGVPGSRANTWKLLSFKAI 120


>02_02_0428 + 10127620-10127662,10128618-10128717,10128773-10129808
          Length = 392

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = -1

Query: 327 IYKKGI*RLILNVKTAELFIIYTIIV*IASPWHGKLNRPLLHTKPNTTSINP 172
           +Y +G+   ++ + +A L+ + T    + +P++G ++       P TT I+P
Sbjct: 93  VYDRGLGNRVIPIISAFLYAVLTERALLVAPYNGDVDALFCEPFPGTTWIHP 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,753,472
Number of Sequences: 37544
Number of extensions: 300651
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)