Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40458
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1219 - 28491185-28494415 34 0.100
06_03_1220 - 28505306-28508497 31 0.93
06_03_1221 - 28514952-28518152 30 1.6
01_05_0442 + 22233024-22233026,22233060-22233650,22233779-22234177 29 2.2
05_06_0203 + 26348360-26348458,26349584-26349645,26349808-263498... 29 2.8
04_04_1240 + 32004823-32005038,32005127-32005315,32005538-320057... 29 2.8
04_03_0808 - 19872656-19873165,19873251-19873583,19874443-198745... 28 5.0
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684... 28 6.6
10_01_0157 - 1785738-1786247,1786334-1786666,1787248-1787624,178... 27 8.7
05_03_0236 - 10761133-10761642,10761729-10762061,10762783-107630... 27 8.7
01_06_0315 + 28416280-28416403,28416488-28416720,28417504-284178... 27 8.7
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 33.9 bits (74), Expect = 0.100
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 165 QRTSHCVVWDGT-CR--GFAIRLGEPGHELN*LLSDVFVLLTSLIFLNIPG 308
QR+ C WDG C G RL PG L +S LT+L++LN+ G
Sbjct: 55 QRSPDCCTWDGVGCGDDGEITRLSLPGRGLGGTISPSIGNLTALVYLNLSG 105
>06_03_1220 - 28505306-28508497
Length = 1063
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +3
Query: 165 QRTSHCVVWDGT-CRGFA--IRLGEPGHELN*LLSDVFVLLTSLIFLNIPG 308
QR+ C WDG C G RL PG L +S LT L LN+ G
Sbjct: 54 QRSPDCCTWDGVGCGGDGEVTRLSLPGRGLGGTISPSIGNLTGLTHLNLSG 104
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 180 CVVWDGT-CR--GFAIRLGEPGHELN*LLSDVFVLLTSLIFLNIPG 308
C WDG C G RL PG L +S LT+L +LN+ G
Sbjct: 61 CCAWDGVGCGVDGAVTRLWLPGRGLGGTISPSIANLTALTYLNLSG 106
>01_05_0442 + 22233024-22233026,22233060-22233650,22233779-22234177
Length = 330
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -1
Query: 132 TSIKNRLSIKNRMFQKMNVQKITL-SLVGSIDIIETSRS 19
+SIKN + + R ++K+N +TL SLV SID ++ + S
Sbjct: 166 SSIKNHVMSERRRWEKLNEMFLTLKSLVPSIDKVDKASS 204
>05_06_0203 +
26348360-26348458,26349584-26349645,26349808-26349895,
26349985-26350085,26350130-26350223,26350323-26350730,
26351090-26351521,26351612-26351755,26351824-26351940,
26352842-26352949
Length = 550
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 234 PARRGGSRNRDKFHPIPHNDWCVVNNSTEDHLTTTSIKNRLSIKNRMFQKMN 79
P + G K P+P W +++T + T TSI + S+ + Q +N
Sbjct: 319 PHQGFGQTEVQKSSPLPDVGWATFDDTTPKNATATSISSTNSLNGPLVQILN 370
>04_04_1240 +
32004823-32005038,32005127-32005315,32005538-32005706,
32006328-32006740
Length = 328
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 490 FFDT*YNLYYFVFPKGLVSKNITAIL 567
FFD NLY F PKGL +K+ +L
Sbjct: 166 FFDATRNLYQFFIPKGLDAKDQVVLL 191
>04_03_0808 -
19872656-19873165,19873251-19873583,19874443-19874543,
19874628-19874853,19874941-19875079,19875339-19875451,
19875628-19875911,19876287-19876326
Length = 581
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -1
Query: 222 GGSRNRDKFHPIPHNDWC-VVNNSTEDHLTTTSIKNRLSIKNRMFQKMN 79
GG+R F + N + VN LT IKN L R F K+N
Sbjct: 335 GGTRTSSGFKAVHLNAYARAVNERFNSTLTGEQIKNHLKTWQRKFSKIN 383
>04_04_0016 -
22167780-22167873,22167978-22168272,22168380-22168455,
22168665-22168853,22168955-22169176,22169315-22169413,
22169502-22169582,22169753-22170060,22171611-22171950,
22172047-22172110,22172191-22172412,22172865-22173043
Length = 722
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 134 VVK*SSVELFTTHQSLCGMGWNLSRFRDPPRRAGT 238
+VK +VEL+ TH + CG + L+ P R GT
Sbjct: 197 IVKLITVELYCTHTAACGF-YYLATTLPPAREGGT 230
>10_01_0157 -
1785738-1786247,1786334-1786666,1787248-1787624,
1787709-1787934,1788148-1788257,1788420-1788471
Length = 535
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -1
Query: 222 GGSRNRDKFHPIPHNDWCV--VNNSTEDHLTTTSIKNRLSIKNRMFQKMN 79
GG+R F + H + C VN LT IKN L R F K+N
Sbjct: 289 GGTRTSSGFKAV-HLNACARAVNERFNSTLTGEQIKNHLKTWQRKFSKIN 337
>05_03_0236 -
10761133-10761642,10761729-10762061,10762783-10763018,
10763103-10763328,10763416-10763796
Length = 561
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -1
Query: 222 GGSRNRDKFHPIPHNDWCV--VNNSTEDHLTTTSIKNRLSIKNRMFQKMN 79
GG+R F + H + C VN LT IKN L R F K+N
Sbjct: 315 GGTRTSSGFKAV-HLNACARAVNERFNSTLTGEQIKNHLKTWQRKFSKIN 363
>01_06_0315 +
28416280-28416403,28416488-28416720,28417504-28417818,
28417905-28418423
Length = 396
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -1
Query: 222 GGSRNRDKFHPIPHNDWCV--VNNSTEDHLTTTSIKNRLSIKNRMFQKMN 79
GG+R F + H + C VN LT IKN L R F K+N
Sbjct: 147 GGTRTSSGFKAV-HLNACARAVNKRFNSTLTGEQIKNHLKTWQRKFSKIN 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,432
Number of Sequences: 37544
Number of extensions: 268450
Number of successful extensions: 536
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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