Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40440
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.9  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    23   2.9  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    23   2.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.9  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 364 YFFCSLPFSKLSKTFLPCPYTSVDDFKE 281
           Y F    +  LSK    CPY + D ++E
Sbjct: 59  YTFLLEWYHTLSKACYDCPYNTQDCYRE 86


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 366 ATSSAVFHLASCPRRFCPAHTLVWMILRNSCPV 268
           AT + +  L  CPR++      +  IL+  C V
Sbjct: 47  ATLTCIEGLRDCPRKYSTPLAKITTILQRYCSV 79


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 366 ATSSAVFHLASCPRRFCPAHTLVWMILRNSCPV 268
           AT + +  L  CPR++      +  IL+  C V
Sbjct: 43  ATLTCIEGLRDCPRKYSTPLAKITTILQRYCSV 75


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 430  NVGST*GPFTRLS*HCNQGFRTAAAVQAC 516
            N G+T G     S  CN    T+ ++  C
Sbjct: 1028 NAGTTPGAILAFSWACNDAVMTSDSIMKC 1056


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 498 CSSEPLITMLGKSSKWTSSGSNIP 427
           C+S  L+T L   S      +N+P
Sbjct: 55  CASNGLVTTLASGSSLNGLTNNVP 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,853
Number of Sequences: 336
Number of extensions: 3407
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)