Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40425
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    34   0.023
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    32   0.069
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.64 
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    26   6.0  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   6.0  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.0  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    26   6.0  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.9  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   7.9  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +1

Query: 253 QQVASLKDINQITKDLLEIRNSEVKAM---EDRFQAMEARYKAEKERYDLVLKRAQTSTT 423
           QQ  +L+       DL   R+S+VK +    DRF+A +A+Y AE  RY   L  ++  + 
Sbjct: 110 QQAKNLRKFIVAPLDLF--RDSKVKPLLQLNDRFKAEQAKYDAEVLRYS-SLGHSKDLSQ 166

Query: 424 INDDLKKEYETQLAIF 471
           + D+ K  YE + + F
Sbjct: 167 MRDEAKSLYEARKSYF 182


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
 Frame = +1

Query: 73  EVKNLETELQAAPGQARGEEPRHHQQHQAATRGAP-----EQSERHDLRQDEAGQESGVA 237
           +VK L    +  P ++  E  +H +Q QAA          E+    ++ Q    ++S V 
Sbjct: 90  KVKELTAMKKTVPFKSEVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVE 149

Query: 238 DRSSDQQVASLKDINQITKDLLEIRNSEVKAMEDRF-----QAMEARYKAE---KERYDL 393
             +    + +++  N++ +   ++ +SE K + D+F     +  E R + +   K++  L
Sbjct: 150 LNALQTSIDTIR--NELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQQDGYYKDQRKL 207

Query: 394 VLKRAQTSTTIND------DLKKEYETQLAIFKELREKYEQRVK 507
           + +R    T ++D       L++EY+TQL  F+      EQR K
Sbjct: 208 IAERDDEKTALDDLYNQRRALQREYDTQLRAFRTYER--EQRAK 249


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 21/85 (24%), Positives = 41/85 (48%)
 Frame = +1

Query: 13  EPDSAFELQG*KRKR*TCSSEVKNLETELQAAPGQARGEEPRHHQQHQAATRGAPEQSER 192
           E ++  +++  K      SSE  + E+E +++  ++  EE    ++ +    G+ E S  
Sbjct: 149 EEEAVVKIEEKKESSSDSSSESSSSESESESSSSESE-EEEEVVEKTEEKKEGSSESSSD 207

Query: 193 HDLRQDEAGQESGVADRSSDQQVAS 267
            +   D +  ESG +D SSD +  S
Sbjct: 208 SESSSDSSS-ESGDSDSSSDSESES 231


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 247 SDQQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKE 381
           SD+ V  LK+ N+  +D+L    +E+    D  + +  + K +KE
Sbjct: 135 SDETVCKLKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKE 179


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 316 SEVKAME--DRFQAMEARYKAEKERY-DLVLKRAQTSTTIND 432
           SE K ME  D+FQAM+A ++   E Y D+V +  +     N+
Sbjct: 226 SEPKGMECLDKFQAMQACFQKHPEIYQDMVGESEEEDAETNE 267


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 446 SFLRSSLMVVLVWARFSTRSYRSFSAL*RASIAWKRSSMALTSEFLISSRSLVIWLISFS 267
           SFL S  +++ +W R   R +   S L  +     RSS  L S + +      +WL +F 
Sbjct: 298 SFLFSFYVLIFIWVRLFARLFLRGSTLVGSVWVLPRSSWVLASFYSLH----FLWLCTFF 353

Query: 266 DA 261
            A
Sbjct: 354 HA 355


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 226 SGVADRSSDQQVASLKDINQITKDLLEIRNSE-VKAMEDRFQAMEARY 366
           S   + SS QQV+  KDI + +  L E++  + +   +D FQ  +A Y
Sbjct: 616 SDTENGSSSQQVSEAKDIVEPSDVLDELQKFDLLPENDDNFQTFQAFY 663


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 609  QSNETVFANNLCNRITSSFRPESELSASRFQRLDFHSLFV 490
            +S+ ++ A+N+     S      ELS+ RF   DFH L V
Sbjct: 1081 ESDASLAADNMDIEDISEESDREELSSMRFGAQDFHGLVV 1120


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 265 SLKDINQITKDLLEIRNSEVKAMEDRFQAMEA 360
           SL + +   KD+LEIR   +KA ++R +   A
Sbjct: 130 SLANTSMTFKDILEIRTQNMKASQNRTEKFVA 161


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 277 INQITKDLLEIR--NSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTSTTINDDLKKEY 450
           +N +  DL E R  ++E+ ++  + Q        +  RY  + +      T+ND   + +
Sbjct: 104 LNLLNYDLSEKRETSNEIPSLVQQIQNCGFLIDEKMRRYPGIFQIHPKDYTMNDLFPQSF 163

Query: 451 ETQLAIFKELREK 489
            T +++++ + EK
Sbjct: 164 PTWISVYRNVPEK 176


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 492 RTKSESLVAENERLKAPTQGGSST*SCYKD-YLQRLSR*IAVFMITIFFSYKCI 650
           RTK   LV ++  ++ P  GG  T  C+ D YL  LSR I+   +     Y+ I
Sbjct: 284 RTKGMILVGDSNNMRHPLTGGGMT-VCFHDAYL--LSRFISPSAVPDLLDYERI 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,309
Number of Sequences: 5004
Number of extensions: 32470
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)