Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40424
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BM83 Cluster: Chromosome undetermined scaffold_116, w...    36   1.2  
UniRef50_Q7RIF1 Cluster: Phosphatase; n=5; Plasmodium (Vinckeia)...    35   2.1  
UniRef50_Q8R962 Cluster: DNA-directed RNA polymerase specialized...    34   2.8  
UniRef50_A5AD52 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_UPI00006CAB29 Cluster: Ras family protein; n=1; Tetrahy...    33   4.9  
UniRef50_A0BRL0 Cluster: Chromosome undetermined scaffold_123, w...    33   4.9  
UniRef50_A3LWK3 Cluster: Predicted protein; n=4; Saccharomycetac...    33   8.6  

>UniRef50_A0BM83 Cluster: Chromosome undetermined scaffold_116,
           whole genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_116,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1002

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +2

Query: 38  FNFLTLIHFHRCYLT*NVNLQFLYCCIILIFVDYVFVKQ*KISQLAYC 181
           F+ L L H++ C     ++LQ ++C ++LIF + +F++   +SQ+A C
Sbjct: 68  FDNLNLCHYYIC-----LSLQIIFCRVMLIFSERLFIRAILLSQIARC 110


>UniRef50_Q7RIF1 Cluster: Phosphatase; n=5; Plasmodium
           (Vinckeia)|Rep: Phosphatase - Plasmodium yoelii yoelii
          Length = 1427

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 286 SFKLYRV-LYSIVHSIKLFLIRNISMINSS*F*YFMTIGKLTDFLLFHEYVVNKYKND 116
           SFKL  +  Y+++ +IK  L  N+ + NS  F Y   +    DF+L+HE   N   N+
Sbjct: 588 SFKLNIIKFYNLLENIKKILTTNLCLSNSQ-FSYHSKLFPFNDFVLYHESETNNIINE 644


>UniRef50_Q8R962 Cluster: DNA-directed RNA polymerase specialized
           sigma subunits, sigma54 homologs; n=4;
           Thermoanaerobacter|Rep: DNA-directed RNA polymerase
           specialized sigma subunits, sigma54 homologs -
           Thermoanaerobacter tengcongensis
          Length = 451

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = -3

Query: 379 YYSLIQSILNNCTFYIKSET*GNVKACKSIRSFK--LYRVLYSIVHSIKLFLIRNISMIN 206
           YYS+++S       YI S+    +   KSI S K  LY+V+ +IV   K FL + I+ + 
Sbjct: 279 YYSILESSDEEAKKYITSKLQSAMWLIKSIESRKETLYKVVKTIVDLQKEFLDKGINYLK 338

Query: 205 SS*F*YFMTIGKLTDFLLFHEYVVNKYKNDAAIQ 104
                  +T  ++ D L  HE  V++  N   +Q
Sbjct: 339 P------LTQKQVADILGIHESTVSRAINGKYVQ 366


>UniRef50_A5AD52 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 229

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/76 (19%), Positives = 43/76 (56%)
 Frame = +1

Query: 403 INISGCEMKSKYSVL*NSDVERIKLNHVASNVTLRTSPLRHARAVCDYKAVNTLSIDTNK 582
           +++SG +  +  +V    +   +++  +++N+   ++P++ +R +   K + TL +D N 
Sbjct: 38  LDVSGNQFNAAQTVKELGNFNNLEMLDLSANLFDASAPMQDSRRLSKLKKLKTLDLDANH 97

Query: 583 LKIIANNSLSSEPNLK 630
            ++    SL++ P+L+
Sbjct: 98  FEVSIFQSLAALPSLR 113


>UniRef50_UPI00006CAB29 Cluster: Ras family protein; n=1; Tetrahymena
            thermophila SB210|Rep: Ras family protein - Tetrahymena
            thermophila SB210
          Length = 1615

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
 Frame = +1

Query: 343  YSYSKCFELKSNNLRSLLYKINISGCEMKSKYSVL-*NSDVERIKLNHVASNVTLRTSPL 519
            Y +S  F   SNN  +  YK N    E + +Y +L   + +  +K N     +TL+T P 
Sbjct: 1047 YQFSSSFSSSSNNQTAKKYKQNDIQIE-QPRYQILSIQNQLNNLKQNQQNIEITLKTEPQ 1105

Query: 520  RHARAVCDYKAVNTLSIDTN---KLKIIANNSLSSEPNLKKKSGS 645
               ++       ++ +I T+   K  I  NNS S   + +K+  S
Sbjct: 1106 NLQKSSLSQMLDSSKNIKTDTIFKSSIRCNNSTSKLHDKQKQESS 1150


>UniRef50_A0BRL0 Cluster: Chromosome undetermined scaffold_123, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_123, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1190

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 529  RAVCDYKAVNTLSIDTNKLKIIANNSLSSEPNLKKK 636
            +A+CD+K  N +SI T ++KI++   L     LK+K
Sbjct: 1030 QALCDFKQKNKISIGTERIKIMSKLGLDEVKQLKQK 1065


>UniRef50_A3LWK3 Cluster: Predicted protein; n=4;
           Saccharomycetaceae|Rep: Predicted protein - Pichia
           stipitis (Yeast)
          Length = 992

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
 Frame = -3

Query: 400 YKVDFLNYYSL-IQSILNNCT--FYIKSET*GNVKACKSIRSFKLYRVLYSIVHSIKLFL 230
           Y  DF N YS  I+  +NN      I  E     +  +    F   R +  + + I + L
Sbjct: 672 YDHDFQNKYSEEIRGKINNAAQVVLITLENFPKNELIRDAARFSFARFIPILKNQINIHL 731

Query: 229 IRNISMINSS*F*YFMTIGKLTDFLLFHEYVVNKYKNDAAIQKL 98
            + ++++ ++     + I +LTDFL F   +V+ YK+D  I +L
Sbjct: 732 AKFVTLVLAA---NNLKISELTDFLSFLGQIVHNYKDDDNIYQL 772


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,565,066
Number of Sequences: 1657284
Number of extensions: 9626043
Number of successful extensions: 19121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19101
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)