Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40423
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 29 0.70
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 28 1.2
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 28 1.2
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 2.1
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 27 2.8
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 27 2.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 3.7
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 26 4.9
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 26 4.9
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 25 6.5
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 6.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 8.6
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 28.7 bits (61), Expect = 0.70
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 285 PQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGYL-TYLGQDTNE 461
P+ +GK+ + LFA+L I T+ +EV A E+ +Q G L QD E
Sbjct: 200 PELPLGKNSGNRQSSKLFADLSKPIIETDAAEIEEVSA--EKARRQFGKNGIRLSQDAQE 257
Query: 462 ALKKKNWYD 488
K+K Y+
Sbjct: 258 EEKQKKKYE 266
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 226 ESRLNILKQKAKRDYSNQESH 288
E RLN + K++ DY NQ+SH
Sbjct: 86 EKRLNEVGTKSQSDYENQQSH 106
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +3
Query: 246 KAKSKERLLKSGIPQTNVGKSEIINEHVNLFAN 344
K K K L I NVGKS +IN VN AN
Sbjct: 263 KKKLKSSLTVGVIGYPNVGKSSVINALVNRSAN 295
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 560 LSKLAYYRYLLCHWCVNTRSLWW 492
+SK YR++ C W NT LW+
Sbjct: 1 MSKSFAYRHIWCFWRFNTPLLWF 23
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 252 KSKERLLKSGIPQTNVGKSEIINEHVNLFANL 347
K+ E + G+P TN+G ++I++ ++ L L
Sbjct: 74 KALEYIKSKGMPLTNIGPADIVDGNLKLILGL 105
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 411 YEKQIGYLTYLGQDTNEALKKKNWY 485
Y K IG LT+L + N+ L +W+
Sbjct: 1055 YAKSIGLLTFLPNELNQKLLTLDWF 1079
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 533 LLCHWCVNTRSLW 495
LL HWC+N RS++
Sbjct: 423 LLLHWCINCRSIF 435
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 381 DKEVKAKQEEYEKQIGYLTYLGQDTNEALKKK 476
+K V+ K E+YE I + T + +NEAL+ +
Sbjct: 666 EKGVEIKFEKYEASIDFSTMKVECSNEALRSR 697
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 348 EDAIKTTNKEHDKEVKAKQEEYEKQIGY-LTYLGQDTNEALK 470
++A + +EH KE K ++E+ E+QI + L G+D N+ ++
Sbjct: 169 QEAREAAIREHQKE-KERREQVEQQIIFDLATSGKDPNKIIQ 209
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 590 TIGFWVSHLHLSKLAYYRYLLCHWCVNTRSLWW 492
T GF+++ L K+ + YL H LWW
Sbjct: 221 TSGFFLNSLSFLKIPFRVYLDSHDLTPNLGLWW 253
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 424 ICFSYSS-CLAFTSLSCSLFVVLIASSRFANKLTCSFIISLFPTF 293
ICF+ + C+A+ +S + I RF SF+ S+ PTF
Sbjct: 29 ICFALLAVCIAYDQISYQMQKGHIPGPRFKIPFMGSFLDSMKPTF 73
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 6.5
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = +3
Query: 258 KERLLKSGIPQTNVGKSEIINEHVNLFANLEDAIKTTNK-----EH-DKEVKAKQEEYEK 419
KE + I GK E E L + LED TNK +H ++E++ K++ ++
Sbjct: 1356 KEAEMTENIHSLEEGKEETKKEIAELSSRLEDNQLATNKLKNQLDHLNQEIRLKEDVLKE 1415
Query: 420 QIGYLTYLGQD-TNEALKKKNWYDVPPE 500
+ + L + +N+ K+ + D E
Sbjct: 1416 KESLIISLEESLSNQRQKESSLLDAKNE 1443
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 533 DTYNKLVLKDEDGKPKNQLCGGLK 604
D Y +++L++E+ KPKN LK
Sbjct: 215 DNYLQIILRNENKKPKNPQLFALK 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,219
Number of Sequences: 5004
Number of extensions: 35216
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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