Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40417
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    28   1.5  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   2.0  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   6.2  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   6.2  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   6.2  

>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 230  YTS*GQKVGPQCVA---PLHMYAIKYYTLIHYVYYVL 129
            YT  G  V  +C+A    L   A+KY  LI Y++Y+L
Sbjct: 952  YTQEGNYVLVRCIAFNLMLQAGALKYTPLIKYIFYIL 988


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 577 VPWRTVAPTCDATRGPELAKTTEFVGLHSRILKCLQRNSLIFSQMKSNRCRFLY 416
           V WR+  PT D T  P    TT  + +HS +   L  N +   + ++  C   +
Sbjct: 531 VAWRSFPPTFDLTITPRATTTTPDILIHS-LCVYLYNNGVSLLRTRAMLCHIYH 583


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 599 GTKFEPRPASHAEPATALCSNKFRRSHALRAHLPETR 709
           GT F P+    + P+T   SN    S  +    P+TR
Sbjct: 205 GTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAPQTR 241


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -1

Query: 214 KRSDRSVWRHFTCMLLNIIH*YITYTTFLT*SVNN*LTNXXXXXXVAGRRGTNCRSFTAT 35
           K  DRS+ R  +C ++NII  YI   T L  +  N L        +     T+  +FT  
Sbjct: 37  KLVDRSIERMESCSIINIITKYIIEQTDLDQAAKNILQFRELDPLLRRLSSTSLLAFTRH 96

Query: 34  PSYF 23
             Y+
Sbjct: 97  LKYY 100


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 610 RAQTSVARGASNSSMLK*VSSVTRAPSTSPRDSP 711
           ++ TS+A  A +   L  VSSVT++PS +P+ +P
Sbjct: 316 KSSTSIATVAPS---LASVSSVTKSPSPTPQSAP 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,247
Number of Sequences: 5004
Number of extensions: 56926
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)