Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40412
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 37 0.014
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 34 0.10
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 34 0.13
02_05_0141 + 26225644-26225880 32 0.54
01_05_0795 + 25287449-25287967,25288078-25288138,25288640-252887... 31 1.2
07_03_1373 - 26110436-26110584,26110585-26110752,26110829-261108... 30 1.6
05_04_0247 + 19358929-19359187,19360439-19360639,19361426-193615... 30 1.6
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 30 2.2
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 29 3.8
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161... 29 5.0
11_08_0084 + 28260647-28262575 28 6.6
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 28 6.6
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 28 8.7
06_01_0189 + 1470006-1470989 28 8.7
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 28 8.7
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 28 8.7
01_01_0599 - 4448290-4448790 28 8.7
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 37.1 bits (82), Expect = 0.014
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 157 LNGECKEFVTQYGSAVIALLVQEIDPASVC 246
++ ECKE V++YG ++ LL+ + DP VC
Sbjct: 308 ISTECKEVVSEYGEMILNLLIAQTDPQKVC 337
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 19 AAPQSKAACAFCQYFLHYLQVQLSDTRTEDKVKAAVQEACDVLPDAL 159
+ P S A C C+ + ++ QL+ +T+D V + + CD LP +
Sbjct: 385 SGPFSSAMCNACETAVVWMHTQLAQNQTQDLVLQYIDQLCDRLPSPM 431
Score = 31.1 bits (67), Expect = 0.94
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 166 ECKEFVTQYGSAVIALLVQEIDPASVC 246
ECK V+QYG ++ L E PA VC
Sbjct: 329 ECKAVVSQYGQQILDQLRAETKPAKVC 355
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 166 ECKEFVTQYGSAVIALLVQEIDPASVC 246
ECK V+QYG ++ LL+ E P+ +C
Sbjct: 319 ECKTVVSQYGQQILDLLLAETQPSKIC 345
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 28 QSKAACAFCQYFLHYLQVQLSDTRTEDKVKAAVQEACDVLPDAL 159
QS C C+ + ++Q QL+ +T+D + + + CD LP +
Sbjct: 378 QSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPM 421
>02_05_0141 + 26225644-26225880
Length = 78
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 664 KPACVWAEATSSCGCSCRLSMSLRVELVYGRVGQLEGI 551
KP WAEA +SC C R+ LV+ VG +EG+
Sbjct: 45 KPRATWAEALASCSMQCP-----RLPLVHVPVGGIEGV 77
>01_05_0795 +
25287449-25287967,25288078-25288138,25288640-25288734,
25288827-25288939,25289480-25289648,25289777-25289816,
25289906-25289970,25290150-25290263,25290398-25290462,
25290572-25290725,25290798-25290914,25292489-25292545
Length = 522
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 160 NGECKEFVTQYGSAVIALLVQEIDPASVC 246
N ECK+ V ++G ++ LL + PA VC
Sbjct: 371 NEECKQVVARHGHEMLELLQDKTPPAQVC 399
>07_03_1373 -
26110436-26110584,26110585-26110752,26110829-26110896,
26111755-26111800,26111929-26112025,26112802-26112884,
26112987-26113062,26113147-26113195,26113517-26113601,
26114247-26114331
Length = 301
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 634 SSCGCSCRLSMSLRVELVYGRVGQLEGIVQLVPTQLQEHADL 509
+SC CS + L + +G + L G + PT+L+ + D+
Sbjct: 177 NSCDCSSAMESQLNISNTFGGINPLPGSKRKCPTRLKPNEDV 218
>05_04_0247 +
19358929-19359187,19360439-19360639,19361426-19361592,
19361819-19362089,19362550-19362818
Length = 388
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 336 VEQLESVLKNNRSEENIRKALDGLCTRLSQKLQSECIDFVDTYS 467
+++L V K+NR + L LCT+L + I +VD Y+
Sbjct: 244 LDELRCVAKHNRVAKLFNLQLHALCTKLRGEFAGASITYVDIYT 287
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 166 ECKEFVTQYGSAVIALLVQEIDPASVC 246
ECK+ V YG ++ +L+ + P +C
Sbjct: 310 ECKQVVRDYGDMILEMLIAQASPMKLC 336
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +3
Query: 336 VEQLESVLK--NNRSEENIRKALDGLCTRLSQKLQSEC-IDFVDTYS 467
VE ++S+ K NN + +++R +DG+ +R S ++S+ +D ++ YS
Sbjct: 204 VELMDSITKGTNNNARKDLRTLVDGILSRTSIYIKSDKELDMMNIYS 250
>03_06_0753 +
36015026-36015256,36015780-36015885,36016132-36016192,
36016278-36016573,36016654-36016793,36016880-36016954,
36017044-36017134,36017677-36017880,36018409-36018453,
36018745-36018830
Length = 444
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 326 AQGAVRFFRI-DVDSADFFCLRADLRAG 246
A GAVR FR+ DV S F LR +L AG
Sbjct: 115 ADGAVRVFRVDDVSSKSFKILRINLPAG 142
>11_08_0084 + 28260647-28262575
Length = 642
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 380 EHSQGSGRSLHAALPETAE--RVHRLRGHVLESARRDAGGRHEREEICVFLKLC 535
+H + +GR L E + H + ES RR+ G E +E+ V + LC
Sbjct: 417 QHIEETGRRLSRYADELGVPFKFHGIAATKKESVRREELGEAEEDEVVVVISLC 470
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +2
Query: 410 HAALPETAERVHRLRGHVLESARRDAGGRHEREEICVFLKLCRDQLHDPLKL 565
H+ LPE +H L H R + R ERE V QL L +
Sbjct: 3 HSLLPEVLPTIHALTHHSATGTRPNPPRRRERESASVHFPFSACQLLHKLSI 54
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 258 ICPQTEEIRRVDVNSEKSNCPLCLFAVEQLESVLKNNRSEE 380
+C + ++ R N CP+C VE+L + NN+ EE
Sbjct: 364 MCSECAKVLRYQTN----RCPICRQPVERLLEIKVNNKGEE 400
>06_01_0189 + 1470006-1470989
Length = 327
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 43 CAFCQYFLHYLQVQLSDTRTEDKVKAAV----QEACDVLPDALNGECKEFVTQY 192
C F L+ +L ++R ++ V AV + CD LP AL G E ++QY
Sbjct: 203 CDFACLLYDLLRGKLDESRVQEIVADAVDIEREFVCDALPVALVGMNGELMSQY 256
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 303 EKSNCPLCLFAVEQLESVLKNNRSEENIRKALD 401
+ + CP+C VE+L + NN++EE + + D
Sbjct: 370 QTTRCPICRQPVERLLEIKVNNKAEEQQQPSPD 402
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 352 DSSCSTAKRHRGQLDFSELTSTRRISSV*GQI*ERDIRWRD 230
DS G LD S +ST+ ISSV + + +I W D
Sbjct: 559 DSLVKMPGSSNGNLDKSSCSSTKTISSVIDDVADYEIPWED 599
>01_01_0599 - 4448290-4448790
Length = 166
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 461 VLESARRDAGGRHEREEICVFLKLCR 538
V+ RR GG E+EE C +L++ R
Sbjct: 89 VISGERRRGGGEEEKEESCKYLRMER 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,468,365
Number of Sequences: 37544
Number of extensions: 411376
Number of successful extensions: 1405
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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