Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40409
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    57   1e-08
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    37   0.012
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    37   0.012
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    37   0.012
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    37   0.012
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    36   0.027
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide...    32   0.33 
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    32   0.44 
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,...    31   0.76 
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    31   1.0  
At3g52480.1 68416.m05771 expressed protein                             30   1.8  
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative            29   2.3  
At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    29   3.1  
At1g62750.1 68414.m07082 elongation factor Tu family protein sim...    29   4.1  
At1g19510.1 68414.m02430 myb family transcription factor contain...    28   5.4  
At4g36570.1 68417.m05192 myb family transcription factor conatin...    27   9.4  
At4g22010.1 68417.m03185 multi-copper oxidase type I family prot...    27   9.4  
At1g67050.1 68414.m07625 expressed protein                             27   9.4  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    27   9.4  
At1g41830.1 68414.m04829 multi-copper oxidase type I family prot...    27   9.4  

>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/32 (78%), Positives = 29/32 (90%)
 Frame = +1

Query: 586 SKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMV 681
           +KK H+NVVFIGHVDAGKSTIGGQI+ L+G V
Sbjct: 97  NKKRHLNVVFIGHVDAGKSTIGGQILFLSGQV 128


>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 589 KKEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
           +K H+N+V IGHVD+GKST  G ++   G
Sbjct: 4   EKFHINIVVIGHVDSGKSTTTGHLIYKLG 32


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 589 KKEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
           +K H+N+V IGHVD+GKST  G ++   G
Sbjct: 4   EKFHINIVVIGHVDSGKSTTTGHLIYKLG 32


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 589 KKEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
           +K H+N+V IGHVD+GKST  G ++   G
Sbjct: 4   EKFHINIVVIGHVDSGKSTTTGHLIYKLG 32


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 589 KKEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
           +K H+N+V IGHVD+GKST  G ++   G
Sbjct: 4   EKFHINIVVIGHVDSGKSTTTGHLIYKLG 32


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +1

Query: 601 VNVVFIGHVDAGKSTIGGQIMSLTGMV 681
           +N+  +GHVD+GKST+ G+++ L G +
Sbjct: 240 LNLAIVGHVDSGKSTLSGRLLHLLGRI 266


>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
           identical to SWISS-PROT:P17745 elongation factor Tu,
           chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
          Length = 476

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +1

Query: 589 KKEHVNVVFIGHVDAGKSTI 648
           KK HVN+  IGHVD GK+T+
Sbjct: 76  KKPHVNIGTIGHVDHGKTTL 95


>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 571 VEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 681
           ++ T+   E + N   I H+D GKST+  ++M LTG +
Sbjct: 56  IDLTKFPSEKIRNFSIIAHIDHGKSTLADRLMELTGTI 93


>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
           putative similar to mitochondrial elongation factor Tu
           [Arabidopsis thaliana] gi|1149571|emb|CAA61511
          Length = 454

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 592 KEHVNVVFIGHVDAGKSTIGGQI 660
           K HVNV  IGHVD GK+T+   I
Sbjct: 65  KPHVNVGTIGHVDHGKTTLTAAI 87


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
           subunit (RPB205) (RPII) (RPB1) nearly identical to
           P|P18616 DNA-directed RNA polymerase II largest subunit
           (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 96  NGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVVARFFFPSFSKPSQASDSTIPLPPPR 275
           N  PD     AE     GA     V  +IS  +     F P F++P       +P+PPP 
Sbjct: 198 NDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFARPDWMILEVLPIPPPP 257

Query: 276 NQKAVL 293
            + +V+
Sbjct: 258 VRPSVM 263


>At3g52480.1 68416.m05771 expressed protein
          Length = 209

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 395 PPTTASVPPDVSPTADSWEVEADDALLTPEETM 493
           PP  A+ PP V+  A  W +  ++ L  P ET+
Sbjct: 86  PPLPAAAPP-VNDVASKWSINGENLLCGPSETL 117


>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
          Length = 681

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 604 NVVFIGHVDAGKSTIGGQIMSLTGMV 681
           N   I H+D GKST+  +++ +TG V
Sbjct: 88  NFSIIAHIDHGKSTLADKLLQVTGTV 113


>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 60  LFILRSATIMSNNGAPDSWENEAEIIGEKG---AKDSNDVSSKISTLNVVARFFFPSFSK 230
           LF L  + I +NN    ++     ++       AK  N+ ++ ++ +N V+   F   S+
Sbjct: 256 LFALPRSQINNNNNGNFTFPRPPPLLQPPSSLFAKRYNNANTPLNCINRVSTAPFSPVSR 315

Query: 231 PSQASDSTIPLPPPRNQKA 287
            S  S  T+P P P  Q A
Sbjct: 316 DSYTSFLTLPYPSPTAQTA 334


>At1g62750.1 68414.m07082 elongation factor Tu family protein
           similar to elongation factor G SP:P34811 [Glycine max
           (Soybean)]
          Length = 783

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 592 KEHVNVVFIGHVDAGKSTIGGQIMSLTG 675
           K++ N+  + H+DAGK+T   +I+  TG
Sbjct: 94  KDYRNIGIMAHIDAGKTTTTERILYYTG 121


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 48  KKTKLFILRSATIMSNNGAPDSWENEAEIIGEKGAKD 158
           K+ K+F    A  + +   PD W+N A+ +G K A++
Sbjct: 15  KQNKMF--ERALAVYDKDTPDRWQNVAKAVGSKSAEE 49


>At4g36570.1 68417.m05192 myb family transcription factor conatins
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 85

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 48  KKTKLFILRSATIMSNNGAPDSWENEAEIIGEKGAKDS 161
           K+ KLF    AT   +   PD W N A  +G K A+++
Sbjct: 15  KENKLFERALATY--DQDTPDRWHNVARAVGGKSAEEN 50


>At4g22010.1 68417.m03185 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 309 LPAEFEEPLSDFWGEVGEWY 250
           +P  F  P  DFW   G+WY
Sbjct: 148 IPVPFSPPDGDFWLLAGDWY 167


>At1g67050.1 68414.m07625 expressed protein
          Length = 264

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +2

Query: 377 PRVEEPPPTTASVPPDVSPTAD--SWEVEADDALLTPEETMNRKKKIGYTRGW*IN 538
           P  +EP P      PD        + E + DD ++T EE  N K   G+ R   +N
Sbjct: 92  PGKKEPEPKPVKSKPDSRKQRKQPNEEQQEDDVIITTEEKTNTKSFWGFKRSSSLN 147


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
            protein contains protein kinase domain, Pfam:PF00069;
            contains serine/threonine protein kinase domain,
            INTERPRO:IPR002290
          Length = 1296

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 410  SVPPDVSPTADSWEVEADDA 469
            SVPP +SP  D W   +D A
Sbjct: 1274 SVPPPISPETDKWTSSSDTA 1293


>At1g41830.1 68414.m04829 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 542

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 318 KTGLPAEFEEPLSDFWGEVGEWY 250
           + G+P  F +P  D+   +G+WY
Sbjct: 148 RPGIPVPFADPAGDYTVLIGDWY 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,777,413
Number of Sequences: 28952
Number of extensions: 231748
Number of successful extensions: 1079
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)