Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40406
         (702 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q82S75 Cluster: AppC; oligopeptide ABC transporter; n=1...    34   3.9  
UniRef50_Q5NYD6 Cluster: Oligopeptide transport system permease ...    33   5.1  
UniRef50_UPI0000E4A0C9 Cluster: PREDICTED: similar to tethering ...    33   9.0  
UniRef50_A0BCT2 Cluster: Chromosome undetermined scaffold_10, wh...    33   9.0  

>UniRef50_Q82S75 Cluster: AppC; oligopeptide ABC transporter; n=17;
           Proteobacteria|Rep: AppC; oligopeptide ABC transporter -
           Nitrosomonas europaea
          Length = 506

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 510 IIRITVYNALCLEPRGQ*LKMRNEDFF*VATLFQWWRENVFVRAVYPQIIHLIL 349
           I+ IT +  LC   RG+ LK+R  ++   A  F      +  R + P ++H++L
Sbjct: 336 ILGITSWTGLCRLLRGETLKLREMEYIQAAHAFGVSHWRILSRHILPNVVHIVL 389


>UniRef50_Q5NYD6 Cluster: Oligopeptide transport system permease
           protein; n=3; Betaproteobacteria|Rep: Oligopeptide
           transport system permease protein - Azoarcus sp. (strain
           EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 476

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 510 IIRITVYNALCLEPRGQ*LKMRNEDFF*VATLFQWWRENVFVRAVYPQIIHLILEKFIL 334
           I+ IT +  LC   RG+ LK+R  D+   A  F      +  R + P ++H+++   ++
Sbjct: 341 ILGITSWTGLCRLLRGETLKLRELDYVHAARAFGVGTAAILRRHILPNVMHIVMIALVM 399


>UniRef50_UPI0000E4A0C9 Cluster: PREDICTED: similar to tethering
           factor SEC34; n=2; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to tethering factor SEC34 -
           Strongylocentrotus purpuratus
          Length = 781

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 28  TTRTAYTVTHRRYRSRTPLQKDLLKTLSVKLKKNQWGSYETYIDKYIRCY 177
           T+  A+T+ + ++RS  P  K L++ +  +L K     Y T +D  + CY
Sbjct: 235 TSENAFTLFYGKFRSNAPKIKALMEQVEQRLDKT--SEYTTLLDDCLHCY 282


>UniRef50_A0BCT2 Cluster: Chromosome undetermined scaffold_10, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_10,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 268

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 271 NMASTMKSYVNCLVSVLRIT*KDKLLQY*VYNLWINCTNENIFPPPLKQCCNLKKILI 444
           +M +TM    NCLV  +     DK+ Q    N+ I C  +  FPPP+    +  KI++
Sbjct: 137 SMETTMPECNNCLVEQVE---NDKITQLHCSNMQIYCLIQASFPPPMSISLDENKIIM 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,126,030
Number of Sequences: 1657284
Number of extensions: 13209247
Number of successful extensions: 27631
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27594
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)