Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40405
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    31   0.18 
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   5.2  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   5.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.1  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 272 IRDMCTKGHHHKIAFGGYEPE*R*TKKHGLSFFYVTKNFFLGILFVLKH 126
           I+ + +KG    + F G++PE   T    LSF  + +N + GI+  L H
Sbjct: 567 IQKVRSKGQEDGVLFYGWKPENSCTLPDHLSFQRIQENIYFGIVAGLSH 615


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 123 YSCTYHSLTYKVLYTRVCAKALFIH*LYGY 34
           ++ T+H + ++ LY  V A  + +   YGY
Sbjct: 84  FASTFHRIPFQFLYLAVIATVIILASYYGY 113


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 480 IRNYNGYINTYIFLLKCIEKEYIVDKERAL*HVKNNFLQKQAKTETNLRI 331
           IR+    +N    LL+  ++E + +KE  L  +KNN  +KQ    T  R+
Sbjct: 41  IRDNCNIVNIIYRLLRATDEERL-EKESLLDAIKNNEYEKQRDNNTIKRL 89


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 191 HGLSFFYVTKNFFLGILFVLKHLI 120
           H L FF++    FL  LF L HL+
Sbjct: 154 HFLFFFFLCVCVFLSFLFSLSHLL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,475
Number of Sequences: 5004
Number of extensions: 50046
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)